PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl014788

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 133aa MW: 15041.3 Da PI: 10.1063

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S25731169	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.2	1.2e-47	13	133	1	121
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrF Ptdeelvv+yL++kv +++l++ +i +vd+yk++Pw+Lp+k+ +ekewyfF++rd+ky++g+r+nra+ sgyWkatg dk++++ +++ Pgl014788 13 LPPGFRFFPTDEELVVHYLCNKVVSHPLPA-FIIGDVDLYKYDPWQLPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPITTCgGRKR 111 79*************************9.67***********8888899*********************************99866777 PP NAM 100 vglkktLvfykgrapkgektdW 121 vg+kk Lvfykg+apkg+kt+W Pgl014788 112 VGVKKALVFYKGKAPKGSKTNW 133 ******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-53	10	133	IPR003441	NAC domain
PROSITE profile	PS51005	51.717	13	133	IPR003441	NAC domain
Pfam	PF02365	7.5E-22	14	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MTQKGGLEGQ IDLPPGFRFF PTDEELVVHY LCNKVVSHPL PAFIIGDVDL YKYDPWQLPE 60 KALFGEKEWY FFTPRDRKYP NGSRPNRAAG SGYWKATGAD KPITTCGGRK RVGVKKALVF 120 YKGKAPKGSK TNW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-63	10	133	14	135	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-63	10	133	14	135	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-63	10	133	14	135	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-63	10	133	14	135	NO APICAL MERISTEM PROTEIN
3swm_A	3e-63	10	133	17	138	NAC domain-containing protein 19
3swm_B	3e-63	10	133	17	138	NAC domain-containing protein 19
3swm_C	3e-63	10	133	17	138	NAC domain-containing protein 19
3swm_D	3e-63	10	133	17	138	NAC domain-containing protein 19
3swp_A	3e-63	10	133	17	138	NAC domain-containing protein 19
3swp_B	3e-63	10	133	17	138	NAC domain-containing protein 19
3swp_C	3e-63	10	133	17	138	NAC domain-containing protein 19
3swp_D	3e-63	10	133	17	138	NAC domain-containing protein 19
3ulx_A	4e-63	1	133	3	133	Stress-induced transcription factor NAC1
4dul_A	3e-63	10	133	14	135	NAC domain-containing protein 19
4dul_B	3e-63	10	133	14	135	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in stems, leaf blades and callus. Weakly expressed in developing flowers. {ECO:0000269\|PubMed:10660065}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269\|PubMed:18813954, ECO:0000269\|PubMed:20632034}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026413001.1	2e-69	NAC domain-containing protein 68-like
Swissprot	Q52QH4	2e-67	NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBL	A0A0D6R3P9	1e-71	A0A0D6R3P9_ARACU; Uncharacterized protein
STRING	VIT_06s0004g00020.t01	2e-66	(Vitis vinifera)
STRING	XP_010257746.1	2e-66	(Nelumbo nucifera)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Taga Y, et al. Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4. Plant Signal Behav, 2009. 4(8): p. 740-2 [PMID:19820348] Xia N, et al. Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses. Mol. Biol. Rep., 2010. 37(8): p. 3703-12 [PMID:20213512] Takasaki H, et al. The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Mol. Genet. Genomics, 2010. 284(3): p. 173-83 [PMID:20632034] Nakayama A, et al. Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice. BMC Plant Biol., 2013. 13: p. 150 [PMID:24093634] Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice. Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60 [PMID:26766411]