PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl014797
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 132aa    MW: 14461.5 Da    PI: 8.7844
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-34002PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07929727
               SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  7 rffartGtCkyGdrCkFaHgp 27
               +++++tG Ck+ ++Ck++H++
  Pgl014797  9 KYYLKTGACKFDATCKYHHPR 29
               79*****************96 PP
2zf-CCCH31.72.5e-105075227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               ++++C  ++rtG Cky   CkF+H++
  Pgl014797 50 GEKECASYMRTGSCKYAVHCKFHHPQ 75
               6789********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.005230IPR000571Zinc finger, CCCH-type
SMARTSM003563629IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5929IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.4794976IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.04E-54976IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-75075IPR000571Zinc finger, CCCH-type
SMARTSM003560.0175075IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-45474IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MAEDAGVVKY YLKTGACKFD ATCKYHHPRD RNRLGGQVHM NDLGLPMCQG EKECASYMRT  60
GSCKYAVHCK FHHPQPATIV SGYASSGSPT TPASPYVHGP RLQGSPTYVP VIFSPSQGVI  120
PMLVWNNYQV SP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633192.12e-38zinc finger CCCH domain-containing protein 3-like
SwissprotQ9SWF92e-29ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0D6R4114e-55A0A0D6R411_ARACU; Uncharacterized protein
STRINGcassava4.1_026428m1e-37(Manihot esculenta)
STRINGXP_002528968.13e-37(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.25e-31C3H family protein