PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl014893
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 126aa    MW: 13998 Da    PI: 5.6321
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S29729118PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26087.22.2e-27392998
     DUF260  9 rrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98
               +++C ++C++   f++++ +kfa++h++FGa nv+kl+++l++++r da++s+vyeA ar++dP  G++g+i +lq+q++ l++++ +++
  Pgl014893  3 KKECLNNCTILYRFASNDLRKFAILHQVFGACNVIKLIQDLSPDQRVDAVNSMVYEASARLQDPALGCTGIIYDLQRQISVLESQITTTR 92
               799*******************************************************************************99998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576134No hitNo description
PROSITE profilePS5089118.438195IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-26391IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MEKKECLNNC TILYRFASND LRKFAILHQV FGACNVIKLI QDLSPDQRVD AVNSMVYEAS  60
ARLQDPALGC TGIIYDLQRQ ISVLESQITT TRGMIQKIRL QEAELLASIP GFGTASEEDT  120
TGIGHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-2438819104LOB family transfactor Ramosa2.1
5ly0_B6e-2438819104LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P1U32e-58A9P1U3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-32LOB domain-containing protein 11