PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl015253
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 88aa    MW: 10156.1 Da    PI: 5.7901
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S40942671PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-43536PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-103875645
                     HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     + E++l+++++k+ G + W++Ia +++ gRt++++  +w 
        Pgl015253 38 EAEEDLIIRLHKLVGDR-WSLIAGRIP-GRTPEEIEKYWK 75
                     78*************99.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.5942882IPR017930Myb domain
SMARTSM007173.3E-93280IPR001005SANT/Myb domain
SuperFamilySSF466895.38E-93478IPR009057Homeodomain-like
CDDcd001671.34E-73675No hitNo description
PfamPF002497.3E-103876IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-133876IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MDRADTDQDR LSSSHTDKEV VEEGGGGERK TRSTDMNEAE EDLIIRLHKL VGDRWSLIAG  60
RIPGRTPEEI EKYWKSRQQE NSKRKTSN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.309351e-150stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592819.12e-18MYB-like transcription factor ETC1
RefseqXP_006593492.12e-18MYB transcription factor MYB172 isoform X1
RefseqXP_028189654.12e-18MYB-like transcription factor ETC1
RefseqXP_028193891.12e-18MYB-like transcription factor ETC1
TrEMBLA9NQX01e-17A9NQX0_PICSI; Uncharacterized protein
STRINGGLYMA12G32130.37e-18(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.18e-21MYB_related family protein