PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl015453
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 413aa    MW: 45067.8 Da    PI: 5.4278
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55349465PU_refUnigeneView CDS
PUT-175a-Picea_glauca-21244PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.2e-11220262855
                HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 Er+RR r+N+++ +Lr+l+P       +K++Ka+i+  A+ Y+++Lq
  Pgl015453 220 SERKRRGRLNERLYTLRSLVPRI-----TKMDKASIVGDAISYVQDLQ 262
                5*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.707212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-17217278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-16218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-13219266No hitNo description
Gene3DG3DSA:4.10.280.106.3E-16219279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-9220262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
XFYMERESQR GVVDVMEQRA GGGGGGGIST AYPNNSSYGH GIFDFNGLAL MEAAAAAAGD  60
HNGLLFGTDL VQGARSPIPI SSSSSSPHAV DLQGWNFAAT DCLWTSHDLP AKAEAFQPTQ  120
GPIPILHGAA ELLTRNEAPE NLSAFPQAQV HHSSFHSFGG LDAPCDPNGY GATGTPVQGK  180
VDTKFLDDYS SDEIDNLDED DKSSKSSQYG RSSESKTLLS ERKRRGRLNE RLYTLRSLVP  240
RITKMDKASI VGDAISYVQD LQKQVKDIQA EIEGLRSNLS GQNDSTPLDG GNSAVSDLDY  300
EMQLYEEGNT NHPLPLPNEP PTWQKLDLDV TKVEDRTFHI RLYCKKNPGV LIRLMRALES  360
IQLDFHNANL TSFDGHIIKT ATVKIKKRYG SLEAEAVRRA ILDATSKYGF TTT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.53200.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R8W49e-54A0A0D6R8W4_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.13e-31FER-like regulator of iron uptake