PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl015574
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 242aa    MW: 27795.9 Da    PI: 5.9944
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55333259PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +t+E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l
        Pgl015574  69 RGNISTDEEELIIRLHHLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 114
                      7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.3621063IPR017877Myb-like domain
SuperFamilySSF466894.97E-2113110IPR009057Homeodomain-like
SMARTSM007170.0181465IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-141770IPR009057Homeodomain-like
PROSITE profilePS5129426.38664118IPR017930Myb domain
SMARTSM007172.5E-1668116IPR001005SANT/Myb domain
PfamPF002491.1E-1569114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2571118IPR009057Homeodomain-like
CDDcd001678.78E-1273114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRSRRCSRD EGFNRGGWTT KEDMILRDYI NIHGLEGGWR SLRDKTGLNR SERVVDYXWM  60
NYLRPNIKRG NISTDEEELI IRLHHLLGNR WSLIAGRLPG RTDNEIKNYW NTHLRKKIGD  120
LTKHDLNEAK MTEEDINIST GLDLVGANQI AVNIENNITD AQSFDEQSKT LLEEDSTMEK  180
CSRHHNNMTS LILEDEELFF KHHGITSEGV LGLDCAVQFP LSPISSAIDF QMSYLFSTVS  240
HA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-171311825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021293767.17e-53transcription factor TT2-like
TrEMBLB8LMJ65e-54B8LMJ6_PICSI; Uncharacterized protein
STRINGXP_008228205.11e-51(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-38MYB family protein