PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl015581
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 316aa    MW: 35555 Da    PI: 7.6842
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55351400PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.2e-18169223256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ +++keq   Lee F ++++++ +++  LAk+l+L+ rqV vWFqNrRa+ k
  Pgl015581 169 RKKLRLSKEQSALLEESFLEHSTLNPKQKNALAKELNLQPRQVEVWFQNRRARTK 223
                778899***********************************************98 PP
2HD-ZIP_I/II125.52.5e-40169259192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq++lLEesF e+++L+p++K++la+eL+lqprqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
    Pgl015581 169 RKKLRLSKEQSALLEESFLEHSTLNPKQKNALAKELNLQPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELR-ALK 259
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.957165225IPR001356Homeobox domain
SMARTSM003892.3E-16167229IPR001356Homeobox domain
SuperFamilySSF466894.49E-18168233IPR009057Homeodomain-like
CDDcd000869.11E-16169226No hitNo description
Gene3DG3DSA:1.10.10.601.6E-17169223IPR009057Homeodomain-like
PfamPF000462.1E-15169223IPR001356Homeobox domain
PROSITE patternPS000270200223IPR017970Homeobox, conserved site
SMARTSM003402.8E-21225268IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-11225259IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEETKNKPRG LERLKTFASD DMTGLALGVG VDLSMAMPAT PLQEDDQKSV PLRLEPLTFR  60
PIAARVXNRS GALGAVSLVH VQELPGRGNG GGDESVWGRA WSDRHESRSI PNEAEYSSVF  120
QADALRAVEN GPMVVKRERE RAFDLEAERD RTCDVSSRTS DEEEIGSTRK KLRLSKEQSA  180
LLEESFLEHS TLNPKQKNAL AKELNLQPRQ VEVWFQNRRA RTKLKQTEVD CEVLKRCCEN  240
LTEENRRLQK ELQELRALKA VPPQCVIGQD NYYMPLPATT LTMCPSCERV ATMENSRNLS  300
FSKSKISQFA QKSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167173TRKKLRL
2217225RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.1270.0root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388907.16e-88homeobox-leucine zipper protein HAT4-like
TrEMBLA9NX561e-150A9NX56_PICSI; Uncharacterized protein
STRINGPP1S31_269V6.12e-87(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-68homeobox from Arabidopsis thaliana