PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl015702

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C2H2

Protein Properties

Length: 592aa MW: 65596.9 Da PI: 9.5923

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55333138	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.3e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Pgl015702 66 FICEVCSKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	10.9	0.0014	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k++ +s+ k H +t+ Pgl015702 142 WKCDRCSKRYAVQSDWKAHSKTC 164 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.23E-6	65	88	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.8E-5	65	88	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.803	66	88	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.23E-6	137	162	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence Send to blast
MADKERARQP PPNQFSTPSS ADGAGNISTA QQNPVKKRKR NLPGNPDPDA EVIALPPRTL 60 MATNRFICEV CSKGFQRDQN LQLHRRGHNL PWKLKQRTSS EMRKRVYICP ESTCVHHDPT 120 RALGDLTGIK KHFCRKHGET KWKCDRCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR 180 DSFITHRAFC DALAEDSTRI SEGISRLPQV APSSSPGKSD VPSPNVRVPS HLAEGPVRSG 240 HSLQFLGHED KSTSTQQASN PIEQIHPSGF TYGTKTMQLG PVGLAGHEYE SQLRRNPHVF 300 PMPMSTTSTN SGSMYSSIYS SRFHGMNTAT FGGDLSPGND XEFRWKYKLP QYPINVSYSS 360 TSEAAQMGAT ASNAPLLSAL RMAGSGLHSA WPSRREGLIA SNLKDQFQSF RPMDNDISAC 420 NSLRSQYSFS ESSIQQRSSE NPGHFHESSI DPRLQPFTPS GLYITENHMQ PDTFGGQFMD 480 PRTSFGGNGP PRKNMGESQF QGRIPMIDNR WGNLNLEVGG DKLTRDFLGV GEVPGGIPRA 540 LSVRDIHVNG RPQFASGKDH LNSYINDIKY PPDSPNSHGG KAQSPQKSWD VS

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence Send to blast

MADKERARQP PPNQFSTPSS ADGAGNISTA QQNPVKKRKR NLPGNPDPDA EVIALPPRTL  60
MATNRFICEV CSKGFQRDQN LQLHRRGHNL PWKLKQRTSS EMRKRVYICP ESTCVHHDPT  120
RALGDLTGIK KHFCRKHGET KWKCDRCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  180
DSFITHRAFC DALAEDSTRI SEGISRLPQV APSSSPGKSD VPSPNVRVPS HLAEGPVRSG  240
HSLQFLGHED KSTSTQQASN PIEQIHPSGF TYGTKTMQLG PVGLAGHEYE SQLRRNPHVF  300
PMPMSTTSTN SGSMYSSIYS SRFHGMNTAT FGGDLSPGND XEFRWKYKLP QYPINVSYSS  360
TSEAAQMGAT ASNAPLLSAL RMAGSGLHSA WPSRREGLIA SNLKDQFQSF RPMDNDISAC  420
NSLRSQYSFS ESSIQQRSSE NPGHFHESSI DPRLQPFTPS GLYITENHMQ PDTFGGQFMD  480
PRTSFGGNGP PRKNMGESQF QGRIPMIDNR WGNLNLEVGG DKLTRDFLGV GEVPGGIPRA  540
LSVRDIHVNG RPQFASGKDH LNSYINDIKY PPDSPNSHGG KAQSPQKSWD VS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-33	138	201	3	66	Zinc finger protein JACKDAW
5b3h_F	2e-33	138	201	3	66	Zinc finger protein JACKDAW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010244313.1	1e-111	PREDICTED: protein indeterminate-domain 2-like
Refseq	XP_010244314.1	1e-111	PREDICTED: protein indeterminate-domain 2-like
TrEMBL	B8LRQ3	0.0	B8LRQ3_PICSI; Uncharacterized protein
STRING	XP_010244313.1	1e-110	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-110	C2H2 family protein