PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl015859
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 402aa    MW: 45525.1 Da    PI: 7.7009
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55335449PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-154592148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed +l ++++ +G g W+ I+++ g++R++k+c++rw++yl
        Pgl015859 45 RGAWTKKEDMILSEYIRIHGDGGWRNIPKKAGLKRCGKSCRLRWLNYL 92
                     89********************************************97 PP
2Myb_DNA-binding53.74.7e-1798143148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++E+el+v+++++lG++ W++Ia +++ gRt++++k++w++++
        Pgl015859  98 RGNISPDEEELIVRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHM 143
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-233695IPR009057Homeodomain-like
PROSITE profilePS5129416.3884092IPR017930Myb domain
SuperFamilySSF466896.5E-2843139IPR009057Homeodomain-like
SMARTSM007178.2E-134494IPR001005SANT/Myb domain
PfamPF002492.0E-144592IPR001005SANT/Myb domain
CDDcd001678.12E-104792No hitNo description
PROSITE profilePS5129426.56593147IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2596147IPR009057Homeodomain-like
SMARTSM007176.8E-1697145IPR001005SANT/Myb domain
PfamPF002496.5E-1598142IPR001005SANT/Myb domain
CDDcd001671.39E-11102143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
XGQHCGSSQQ IRGSAAVDLV FKGIRGCRKY KMGRSPCCSK EGLNRGAWTK KEDMILSEYI  60
RIHGDGGWRN IPKKAGLKRC GKSCRLRWLN YLRPDIKRGN ISPDEEELIV RLHRLLGNRW  120
SLIAGRLPGR TDNEIKNYWN THMSKKLLSM NESQTKPLPD LKTRSKYPSP LQNQVFKANP  180
VKITTVVRPS ELVKPNGYTN RRSDEAFRLS NVMNSCKSRY HLPVNDSITE SESKPIAFAK  240
ADNIVETEAA KSTISMPSLA DQQSPQSNHF DAATLAGSFL YLNELSSPDS HLLSYPSNCS  300
TDFGLEEFYG GPATFAGRTN EFEDMCCDQS NMERLNNFTV ADKQEMEELF HNAQRLDWIH  360
EVDDLQKSSP EQLSLLLLES EDEWEERATG KAVLENSEQL IP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-244314725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.312470.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844495.17e-73PREDICTED: transcription factor MYB12-like isoform X2
TrEMBLA0A167V9010.0A0A167V901_PICAB; Transcription factor MYB30
STRINGXP_004287618.12e-71(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.17e-66myb domain protein 3