PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl015869

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WRKY

Protein Properties

Length: 202aa MW: 22482.9 Da PI: 5.4528

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55341215	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	51.2	2.5e-16	142	169	2	29
--SS-EEEEEEE--TT-SS-EEEEEE-S CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCts 29 +D ++WrKYGqK++kgs++pr+YYrC++ Pgl015869 142 SDMWAWRKYGQKPIKGSPYPRGYYRCSF 169 69************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.3E-15	136	169	IPR003657	WRKY domain
SuperFamily	SSF118290	3.92E-13	139	169	IPR003657	WRKY domain
SMART	SM00774	1.4E-7	141	180	IPR003657	WRKY domain
PROSITE profile	PS50811	16.765	142	180	IPR003657	WRKY domain
Pfam	PF03106	2.0E-11	143	170	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MVLEDHCCNE IKGEEMGKGF QLPIRRTRXN QMNEGEFMSG TSIVKQELED KLDFVQPASF 60 VYSGELVEAL QASSSLGEET NNKSCDLPGS PVKRDSPERS TGEDCDVKAV PCSKRRKTVE 120 KKVVCVPVGP ADGRQKNDGP PSDMWAWRKY GQKPIKGSPY PRGYYRCSFF EDDESRNSGG 180 IDRFNFFSWS GSCGLLGNNA VI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.15018	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q93WV5	9e-20	WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBL	A0A0D6R4G3	7e-46	A0A0D6R4G3_ARACU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.2	4e-22	WRKY DNA-binding protein 69

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]