PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl015942
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HB-other
Protein Properties Length: 215aa    MW: 24914.2 Da    PI: 5.2094
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55346197PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.62.8e-101692071654
                HHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  16 eelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                e+  e n+yps++++ e A+ +gL+ +q+ +WF N+R k
  Pgl015942 169 EKSHETNPYPSKNDKLEFARCTGLEPKQIENWFSNQRKK 207
                566678*******************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012561.5E-83081IPR005541KNOX2
PfamPF037917.3E-153575IPR005541KNOX2
SMARTSM003896.4E-7147215IPR001356Homeobox domain
PROSITE profilePS5007112.973147211IPR001356Homeobox domain
SuperFamilySSF466898.55E-13151208IPR009057Homeodomain-like
CDDcd000863.23E-11151208No hitNo description
Gene3DG3DSA:1.10.10.601.2E-18155208IPR009057Homeodomain-like
PfamPF059201.0E-11170206IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
SVXKVGVYDQ TVVAQLDQLI DEYTRVLSNK SISSGSRPDL DQFMVAYCSM LESYQEELNH  60
TFEETKEFLK TLEKRVAEMR MGDVKEVKEG MQSAVPRQRF QAMDMEVKLQ ATIDAMMEDG  120
LPSLLNIQMS QSQIAQVTME VKEAMNMQRA RKFSRLPEDA TKILQDWWEK SHETNPYPSK  180
NDKLEFARCT GLEPKQIENW FSNQRKKSCA TRGIF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.286570.0stem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-17KNOTTED1-like homeobox gene 4