PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl016207

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WRKY

Protein Properties

Length: 452aa MW: 50124 Da PI: 5.0018

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55334030	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.3	1.2e-31	245	301	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK +k+s++prsYYrCt ++C +kk+vers edp++++itYeg H h Pgl016207 245 DDGYKWRKYGQKAIKNSPHPRSYYRCTNPRCFAKKQVERSVEDPETITITYEGLHMH 301 8*******************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.4E-29	233	302	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-26	242	302	IPR003657	WRKY domain
SMART	SM00774	1.0E-35	244	303	IPR003657	WRKY domain
PROSITE profile	PS50811	26.498	244	304	IPR003657	WRKY domain
Pfam	PF03106	7.1E-25	245	301	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MDSNMQNFCG IGKRKLHDQA SEISDCWDYC CSLPILKKFN AVSPQKNSVD SPSEDNIILD 60 DDFDFSYMSE LLHDDQDVGR FPDVNMKSFD QSSQGGCDYV DGFLQSENPE NISISAMNAD 120 NLKFLNGNQE IETGSACTNT HSFPTLMDVQ SALLRQNQSG AVSATDSVSN SSSKSCVFNS 180 FYAGALRSQA WFPTSGLKRD QDIMSQSSYR SFSKSIDELF YRRLNRAKSE SRYSLKIKCP 240 GSNIDDGYKW RKYGQKAIKN SPHPRSYYRC TNPRCFAKKQ VERSVEDPET ITITYEGLHM 300 HYSYSQIQLT QPNNNSSLLR RLQGDNSIII KDENPSKDHK GYYNNNNVDE GAVDPKTASS 360 SFKIDAVEGW AAAVAVPQRH QQEEEVEDQV EENCQTLNID GRRHAFGGGC GGDIGVVEHG 420 GGRADGLPQD IVPLGIINPF SSSSSSSSSS SS

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MDSNMQNFCG IGKRKLHDQA SEISDCWDYC CSLPILKKFN AVSPQKNSVD SPSEDNIILD  60
DDFDFSYMSE LLHDDQDVGR FPDVNMKSFD QSSQGGCDYV DGFLQSENPE NISISAMNAD  120
NLKFLNGNQE IETGSACTNT HSFPTLMDVQ SALLRQNQSG AVSATDSVSN SSSKSCVFNS  180
FYAGALRSQA WFPTSGLKRD QDIMSQSSYR SFSKSIDELF YRRLNRAKSE SRYSLKIKCP  240
GSNIDDGYKW RKYGQKAIKN SPHPRSYYRC TNPRCFAKKQ VERSVEDPET ITITYEGLHM  300
HYSYSQIQLT QPNNNSSLLR RLQGDNSIII KDENPSKDHK GYYNNNNVDE GAVDPKTASS  360
SFKIDAVEGW AAAVAVPQRH QQEEEVEDQV EENCQTLNID GRRHAFGGGC GGDIGVVEHG  420
GGRADGLPQD IVPLGIINPF SSSSSSSSSS SS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-20	244	301	17	74	Probable WRKY transcription factor 4
2lex_A	4e-20	244	301	17	74	Probable WRKY transcription factor 4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	2e-29	WRKY DNA-binding protein 49