PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl016270
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 155aa    MW: 17684.3 Da    PI: 10.8646
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S40837903PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-094486347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E+e +  a +q G++ +++I ++++  +  +q++++++ +
        Pgl016270 44 AWTRQEEENFFIALRQVGKN-FEKITSRVQ-SKNKNQVRHYYYRL 86
                     6*****************99.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.56E-123791IPR009057Homeodomain-like
PROSITE profilePS5129312.4334091IPR017884SANT domain
Gene3DG3DSA:1.10.10.608.1E-74089IPR009057Homeodomain-like
SMARTSM007175.0E-64189IPR001005SANT/Myb domain
CDDcd001674.83E-64487No hitNo description
PfamPF002492.5E-74486IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MQADQEAQAH AEAEAGPSGE SLPAENGAAP CPAPGKKPTR QWAAWTRQEE ENFFIALRQV  60
GKNFEKITSR VQSKNKNQVR HYYYRLIKRM NKLLGPGFVV DAKNTKDANA AMLRWWSLLE  120
KHSCSASKLH LKPRRFKTFV TALGHQLLKD RKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.278130.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854485.34e-70TSL-kinase interacting protein 1 isoform X1
RefseqXP_020529268.13e-70TSL-kinase interacting protein 1 isoform X2
SwissprotQ8LJT81e-66TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLB8LRI71e-108B8LRI7_PICSI; Uncharacterized protein
STRINGGLYMA02G05420.24e-69(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.22e-65TSL-kinase interacting protein 1