PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl016301
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 423aa    MW: 46414.5 Da    PI: 7.3923
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55337193PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-0825621248
                     HHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 12 lvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     l +++k++G   +W+ +a+  g+ R++k+c++rw +yl
        Pgl016301 25 LTNYIKKHGLLsCWSYVAKQAGLQRCGKSCRLRWINYL 62
                     77899****889************************97 PP
2Myb_DNA-binding42.71.3e-1368111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++  E+ l+v++   lG++ W+ Ia +++ gRt++++k++w++
        Pgl016301  68 RGAFSIHEERLIVHLQSILGNR-WSQIATHLP-GRTDNEIKNFWNS 111
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00717121864IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-162369IPR009057Homeodomain-like
SuperFamilySSF466893.76E-2024109IPR009057Homeodomain-like
CDDcd001670.001082562No hitNo description
PfamPF002492.8E-62562IPR001005SANT/Myb domain
PROSITE profilePS500907.2242562IPR017877Myb-like domain
PROSITE profilePS5129423.35663117IPR017930Myb domain
SMARTSM007175.9E-1267115IPR001005SANT/Myb domain
PfamPF002492.5E-1168111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2270117IPR009057Homeodomain-like
CDDcd001674.58E-975110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MAATQLHPNK SLENVFGHPK KITXLTNYIK KHGLLSCWSY VAKQAGLQRC GKSCRLRWIN  60
YLRPGLKRGA FSIHEERLIV HLQSILGNRW SQIATHLPGR TDNEIKNFWN SCIKKKLMLQ  120
HQLPSTSSTT TKGNTNTKSN IPSQSSLVCN TNSMSAHAHA QDAFASYHSH GLDQNAEFSV  180
DPNPINNQLI SYSQLWINAT SAHTHGSFSG HADFTSPTLL AQNLNTHKAA KPSTCDQLII  240
ESCRNIVPRP EAPASADYSL VSNGITIPAL VERHIESDGQ MNEDEIYSSF TASSGINAWS  300
TGHSYSNIAA GFSDVNPGVY STTHDHELLG ITILEDHMDR HKSYQLPHIQ GGEEGSGDQL  360
GCSRISNQEA NSKPIPVIFG GSGPLEIQDC NGGGRQVTVW AHGDMYNINS TSASDLFHQI  420
YLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-212911722108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.309000.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYE85e-63A5JYE8_PICGL; R2R3-MYB transcription factor MYB4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.11e-46myb domain protein 50