PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl016333
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 441aa    MW: 49538.3 Da    PI: 6.613
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55339907PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-16552148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ ++k++G g W   ++  g+ R++k+c++rw +yl
        Pgl016333  5 KGPWTPEEDQILISYIKKHGHGKWLELPKQAGLMRCGKSCRLRWTNYL 52
                     79********************************************97 PP
2Myb_DNA-binding46.96.5e-1558102147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++  E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++
        Pgl016333  58 RGNFSLKEEQTIIHLHQILGNR-WSAIASHLP-GRTDNEIKNVWNTH 102
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.5E-30199IPR009057Homeodomain-like
PROSITE profilePS5129426.937156IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-24255IPR009057Homeodomain-like
SMARTSM007172.2E-13454IPR001005SANT/Myb domain
PfamPF002496.4E-15552IPR001005SANT/Myb domain
CDDcd001671.13E-11752No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2456106IPR009057Homeodomain-like
SMARTSM007172.4E-1357105IPR001005SANT/Myb domain
PROSITE profilePS5129416.63457107IPR017930Myb domain
PfamPF002498.9E-1458102IPR001005SANT/Myb domain
CDDcd001671.43E-960103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MGIKKGPWTP EEDQILISYI KKHGHGKWLE LPKQAGLMRC GKSCRLRWTN YLRPDIKRGN  60
FSLKEEQTII HLHQILGNRW SAIASHLPGR TDNEIKNVWN THFKKRFLQI GVDLVAPRRY  120
NVSSCHAAVS IPDIHDEETD HHSQSHGCKS ESVKMAFKKE GNINESLARQ PLQVTKALHD  180
QGPSDNSSHI QKTPDDQNMI NSHQHEAYYK LNSSGNNYSY SSDSSRVPSP FGLCSATDNK  240
EKTNSEKLAA VMPFDYIRTG EKKMLAVDYT SLLHSSYTDS LKLTLDNGEV NWNPLAGNQQ  300
NFVSLGCGEF QEDNRAVVQQ AYPEGNLAYY SSMLSLSSAT ENNTLGDQAV AYSFSNGAAA  360
GVSGQQIKVK VEPSGTNFSV EQFLELADLT TGTNMESKNN IYDRWPYMNL VDQDEGMEYW  420
VNLLRQVGPL PFFETISPPD L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2751067107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PSI20.0C0PSI2_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.13e-63myb domain protein 107