PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl016371

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

BBR-BPC

Protein Properties

Length: 252aa MW: 28087.9 Da PI: 9.3207

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55340716	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	67.2	6.9e-21	1	156	1	157
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.salpvg 98 mdddg + r++ e++ +k++ gl+ ms++aerda+i ern+a+sekkaa+ae++ a qrd a a+rn a++erd +++al +++++ + + + Pgl016371 1 MDDDGRLDiRHWDTLEQS--VKDHPGLKFMSVLAERDAAILERNTAFSEKKAAFAEKETAIFQRDVAYADRNTAILERDAAAAALDYARDGGWnGQRSLS 98 9**********98887..*****************************************************************9998763567789 PP GAGA_bind 99 vqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrak 157 +++ls++k ++ l + +p ++ ++ +r + p+ ea++ ++ +k+ k+++++k Pgl016371 99 CGTLSNAKILQVLAE--NPTFSAREYQtMRPINVAYPAPVLEAPPYEEPQKTAKRTSKKK 156 999999999998777..7888888888788888888999999888888777777655554 PP
2	GAGA_bind	223.8	1.4e-68	158	252	207	301
GAGA_bind 207 tlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 ++P+PvC+CtG+ +qCY+WGnGGWqSaCCtt+iS+yPLP++++rrgaR+agrKmS+gaf+klLe+L aeGy+l+ p+DLk++WAkHGtnkfvtir Pgl016371 158 AMPIPVCTCTGVAQQCYRWGNGGWQSACCTTSISMYPLPMNPNRRGARVAGRKMSGGAFRKLLERLGAEGYNLNYPIDLKSYWAKHGTNKFVTIR 252 7*********************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.3E-95	1	252	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.6E-13	1	152	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	5.2E-66	158	252	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MDDDGRLDIR HWDTLEQSVK DHPGLKFMSV LAERDAAILE RNTAFSEKKA AFAEKETAIF 60 QRDVAYADRN TAILERDAAA AALDYARDGG WNGQRSLSCG TLSNAKILQV LAENPTFSAR 120 EYQTMRPINV AYPAPVLEAP PYEEPQKTAK RTSKKKDAMP IPVCTCTGVA QQCYRWGNGG 180 WQSACCTTSI SMYPLPMNPN RRGARVAGRK MSGGAFRKLL ERLGAEGYNL NYPIDLKSYW 240 AKHGTNKFVT IR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.10633	0.0	somatic embryo\| stem\| vegetative bud

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006852993.3	8e-82	LOW QUALITY PROTEIN: barley B recombinant-like protein D
Swissprot	Q5VSA8	5e-67	BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBL	H1ZN64	1e-159	H1ZN64_PICSI; GAGA-binding transcriptional activator

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	2e-57	basic pentacysteine 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]