PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl016411

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WRKY

Protein Properties

Length: 204aa MW: 23275.8 Da PI: 8.301

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55338755	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	83.9	1.5e-26	144	200	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYG+K k+s++pr+YYrC+ +C vkk ver+a+d+ +v++tY g+Hn Pgl016411 144 QDGYKWRKYGRKYLKNSPNPRNYYRCSNISCDVKKTVERDAHDKGLVITTYVGKHNQ 200 8******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.6E-28	133	201	IPR003657	WRKY domain
SuperFamily	SSF118290	2.75E-25	135	202	IPR003657	WRKY domain
PROSITE profile	PS50811	27.531	138	203	IPR003657	WRKY domain
SMART	SM00774	8.2E-26	143	202	IPR003657	WRKY domain
Pfam	PF03106	5.3E-20	144	199	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MANFDQRIGH LQATNKVFSK GQTQPPQEAN CSQHMNEGAE AFEISDFLVL EEEFDNSCKT 60 EDAGDQSYNF NSVNSGPSIQ LDYGRSFPSN RPWIQGIHSD QNSTGIQTDE PPETMNPKKI 120 SRKRKAEGAL KYAFLTRSET DILQDGYKWR KYGRKYLKNS PNPRNYYRCS NISCDVKKTV 180 ERDAHDKGLV ITTYVGKHNQ KVQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-22	136	204	7	75	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.25609	0.0	needle

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D6R4C9	3e-36	A0A0D6R4C9_ARACU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	6e-28	WRKY DNA-binding protein 57