PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl016414
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 259aa    MW: 28622 Da    PI: 4.5905
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55334762PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-42963PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.48.9e-102391148
                     HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +l+ +++  G g+W++ +++ g+ R++k+c++rw +yl
        Pgl016414  2 KLISYIATNGHGCWSSLSERAGLQRCGKSCRLRWMNYL 39
                     7999********************************97 PP
2Myb_DNA-binding45.81.4e-144588146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+++teE+  ++ + ++l ++ W+ Ia++++ gRt+ ++k++w++
        Pgl016414 45 RGNFSTEEENAIISLQARLNNR-WAQIAKHLP-GRTDTEIKNYWHS 88
                     89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.5141IPR001005SANT/Myb domain
PROSITE profilePS512949.993139IPR017930Myb domain
PfamPF002499.7E-9239IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-17246IPR009057Homeodomain-like
SuperFamilySSF466892.53E-21286IPR009057Homeodomain-like
CDDcd001676.68E-6239No hitNo description
PROSITE profilePS5129423.2594094IPR017930Myb domain
SMARTSM007171.4E-134492IPR001005SANT/Myb domain
PfamPF002496.6E-134589IPR001005SANT/Myb domain
CDDcd001671.43E-104787No hitNo description
Gene3DG3DSA:1.10.10.601.3E-234793IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MKLISYIATN GHGCWSSLSE RAGLQRCGKS CRLRWMNYLR PGIKRGNFST EEENAIISLQ  60
ARLNNRWAQI AKHLPGRTDT EIKNYWHSCL KKKAVAAGAA NQGVCEAPTM ILDPIDIDVV  120
DMDPAPEIDL YGDSGAGCSR FEVILSPSIT PEVTDWGNFE PNCDQFSANG SSVYKETLND  180
DDRYGDASLD FPLVGDRNSC CSTTVGNQNW QPVDSNCVSF SPSSCSLLNQ KNPEETLFEQ  240
IQAALIMLSE DFGSELRPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-1919436128MYB TRANSFORMING PROTEIN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.104150.0stem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.14e-44myb domain protein 50