PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl016508
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 448aa    MW: 49783.1 Da    PI: 4.8195
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55332327PU_refUnigeneView CDS
PUT-175a-Picea_glauca-28893PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20112160355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+G+r+++ +g+W+AeIrdp++    +r++lg+f taeeAa+a++aa++k++g
  Pgl016508 112 YRGIRQRP-WGKWAAEIRDPRK---GARVWLGTFNTAEEAARAYDAAARKIRG 160
                9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.2E-32111169IPR001471AP2/ERF domain
PROSITE profilePS5103223.999111168IPR001471AP2/ERF domain
SMARTSM003801.2E-36111174IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22111169IPR016177DNA-binding domain
CDDcd000183.17E-19112167No hitNo description
PfamPF008476.5E-14112160IPR001471AP2/ERF domain
PRINTSPR003671.2E-11112123IPR001471AP2/ERF domain
PRINTSPR003671.2E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MCGGAIISDF MIPPANRGRR VTARDIWPDF DKFSEFINGG APVETFDVSV NVDDDDEDFD  60
DDDFLDFDES YQNKNKKKEQ QPIPTKGFEL PLARSLEGPA AKSAGRKRKN LYRGIRQRPW  120
GKWAAEIRDP RKGARVWLGT FNTAEEAARA YDAAARKIRG KKAKVNFVDE PPPIKKETNN  180
GKGSGKESSK KIKSCTTPKA DHFQGFKMAN PSNTHLNFNQ KSPNPSFDDL GFLNSESQLH  240
SICNRNFATK QSSCALPAYS TDFSDFDESE VENLVPQPAN FEPMKNIHKR KGFNYFDSDT  300
SSVSVDRSHF SWIPEVKTPE ISSVRKAEAE SNQCNFADIS TPVATSVSVG SPEVVLSPFN  360
NGLNKSPSVE DVVASEKSPK LEESSQLEIS EDLPSLESYP WLFQLPYFEG NLDQSLQGVG  420
IGEASFPDGE NALQLWNFDA VPISDSAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21112167359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.2530.0root| somatic embryo| stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NWS10.0A9NWS1_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-24ethylene-responsive element binding protein