PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl016884

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

G2-like

Protein Properties

Length: 479aa MW: 53581 Da PI: 6.6405

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55333071	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.6	1e-31	253	307	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtp++He+F+e v++LGG ++AtPk il+lm+v+gLt++hvkSHLQkYR+ Pgl016884 253 KPRMRWTPDIHENFLESVNKLGGGDRATPKGILKLMNVEGLTIYHVKSHLQKYRM 307 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.127	250	310	IPR017930	Myb domain
SuperFamily	SSF46689	1.68E-17	251	307	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-29	252	308	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-24	253	307	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-7	255	306	IPR001005	SANT/Myb domain
Pfam	PF14379	8.8E-21	338	384	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MRNSSSGLPS QVFSSGLSQN PNFILKVPSR PCVLPPIISS HRPKVPDMEP VSLEKEMNCN 60 PTGLPYTSPV IPQQHNQLDS QQNQLGTVGS HSFVHHASKI SIPVSVMQSS QLGCSQPAFY 120 GNFRKQSNQD SWSGYPFREV LDISENAPQC SQRHLDVASN GMVVEDIHDK QNDWQAWAEQ 180 LVSYNDSLAT SWTDPLMDEN IQDAGLKAIY HAPKPATTDC VVHETHSQQH YTALSETQMG 240 ANSTVSETGV PNKPRMRWTP DIHENFLESV NKLGGGDRAT PKGILKLMNV EGLTIYHVKS 300 HLQKYRMARH IPDTGRGNSG KARNASDILP SLDMKTGIQI TEALQLQMEV QKQLHEQLEV 360 QRNLQMRIEE QGRRLKKMFE ERQKKDPLFK APQASSGDPS CQSSETILYA TNLEATKRKS 420 DSETSPISEL VDGNDSQMLR DHNDNSGEDE KPCHKSTLIS EGIESPPMKR VKQMYNLDH

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MRNSSSGLPS QVFSSGLSQN PNFILKVPSR PCVLPPIISS HRPKVPDMEP VSLEKEMNCN  60
PTGLPYTSPV IPQQHNQLDS QQNQLGTVGS HSFVHHASKI SIPVSVMQSS QLGCSQPAFY  120
GNFRKQSNQD SWSGYPFREV LDISENAPQC SQRHLDVASN GMVVEDIHDK QNDWQAWAEQ  180
LVSYNDSLAT SWTDPLMDEN IQDAGLKAIY HAPKPATTDC VVHETHSQQH YTALSETQMG  240
ANSTVSETGV PNKPRMRWTP DIHENFLESV NKLGGGDRAT PKGILKLMNV EGLTIYHVKS  300
HLQKYRMARH IPDTGRGNSG KARNASDILP SLDMKTGIQI TEALQLQMEV QKQLHEQLEV  360
QRNLQMRIEE QGRRLKKMFE ERQKKDPLFK APQASSGDPS CQSSETILYA TNLEATKRKS  420
DSETSPISEL VDGNDSQMLR DHNDNSGEDE KPCHKSTLIS EGIESPPMKR VKQMYNLDH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-26	253	310	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-26	253	310	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-26	253	310	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-26	253	310	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-26	253	310	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-26	253	310	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-26	253	310	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-26	253	310	2	59	Protein PHOSPHATE STARVATION RESPONSE 1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	465	472	PPMKRVKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.3	6e-64	G2-like family protein