PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl016894

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB

Protein Properties

Length: 285aa MW: 32046.1 Da PI: 8.2128

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55343065	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.1	3.5e-12	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT Ed +l ++++++G g W+ + + g+ R++k+c++rw +yl Pgl016894 14 RGGWTVKEDMILSQYIRLHGDGGWRNLPPKAGLSRCGKSCRLRWTNYL 61 789*******************************************97 PP
2	Myb_DNA-binding	49.5	9.5e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ +++E++l+v+ +++lG++ W++Ia +++ gRt++++k++w++ Pgl016894 67 RGNISPDEEDLIVRMHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7899****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-20	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.718	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	7.81E-27	11	108	IPR009057	Homeodomain-like
SMART	SM00717	7.2E-10	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	6.7E-11	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.46E-7	17	61	No hit	No description
PROSITE profile	PS51294	25.362	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-24	65	116	IPR009057	Homeodomain-like
SMART	SM00717	4.3E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-14	67	110	IPR001005	SANT/Myb domain
CDD	cd00167	2.91E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MGRSPCCSKQ GLNRGGWTVK EDMILSQYIR LHGDGGWRNL PPKAGLSRCG KSCRLRWTNY 60 LRPDIKRGNI SPDEEDLIVR MHRLLGNRWS LIAGRLPGRT DNEIKNYWNT RLNKKLLSVN 120 NSHPKASVQN LKTSSKSPSP LHNHVLKTTP IKTTVVIYPE MVRPNRCNGY GGRNCSSDEA 180 LKLCNVNENT NSIVHDDSQH IAFGMANINL LEIEGGNCTS SLWSLEEQRS PHSYYFAEDT 240 AILADSFLEL NELSSPDTNL LSLNFELEEF YRESATLVSG TSDPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-23	12	116	25	128	MYB TRANSFORMING PROTEIN
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269\|PubMed:9839469}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:18541146, ECO:0000269\|PubMed:9839469}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013458423.1	2e-71	transcription factor MYB8
Swissprot	Q9S9K9	4e-62	MYB3_ARATH; Transcription factor MYB3
TrEMBL	A0A167V901	1e-113	A0A167V901_PICAB; Transcription factor MYB30
STRING	XP_004287618.1	2e-70	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-64	myb domain protein 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Wada T,Hayashi N,Tominaga-Wada R Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1089372 [PMID:26339713] Wada T,Tominaga-Wada R CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression. Plant Sci., 2015. 241: p. 260-5 [PMID:26706076] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]