PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl016927
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HB-other
Protein Properties Length: 108aa    MW: 13114.7 Da    PI: 10.161
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55508654PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.2e-182378257
               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
   Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                kR   t++qle Le+    ++yps++ r++L+++lgL++rq ++WF+ rR k+kk
  Pgl016927 23 TKRKMKTPTQLELLEKNLWDDNYPSESVRADLSSQLGLSDRQLQIWFCHRRLKDKK 78
               58999*************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-17879IPR009057Homeodomain-like
SuperFamilySSF466891.46E-161379IPR009057Homeodomain-like
PROSITE profilePS5007116.1311979IPR001356Homeobox domain
SMARTSM003891.0E-142183IPR001356Homeobox domain
CDDcd000864.20E-102473No hitNo description
PfamPF000462.2E-152478IPR001356Homeobox domain
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MELEGERKLQ PQPPSSSQED KNTKRKMKTP TQLELLEKNL WDDNYPSESV RADLSSQLGL  60
SDRQLQIWFC HRRLKDKKER EKEKEKEKEK EKEKEKEKEK QLKKKKKX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17178RRLKDKKE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398533.11e-22homeobox-DDT domain protein RLT2-like isoform X1
RefseqXP_024398535.11e-22homeobox-DDT domain protein RLT2-like isoform X1
RefseqXP_024398536.11e-22homeobox-DDT domain protein RLT2-like isoform X1
RefseqXP_024398537.11e-22homeobox-DDT domain protein RLT2-like isoform X1
RefseqXP_024398538.11e-22homeobox-DDT domain protein RLT2-like isoform X1
RefseqXP_024398539.11e-22homeobox-DDT domain protein RLT2-like isoform X2
SwissprotQ9FFH14e-19RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A176VF776e-22A0A176VF77_MARPO; Uncharacterized protein
TrEMBLA0A2R6XQZ36e-22A0A2R6XQZ3_MARPO; Uncharacterized protein
STRINGPP1S15_37V6.15e-22(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.12e-19Homeodomain-like transcriptional regulator