PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl016947
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 198aa    MW: 21191.6 Da    PI: 5.0639
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-849264PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-05172192121
                EEETTTTEEESSHHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                ++C+ C++ F + s L++H  
  Pgl016947 172 HVCNTCSRNFATESALTQHNA 192
                79*****************66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.907172198IPR007087Zinc finger, C2H2
PROSITE patternPS000280174195IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MRKVAAQNLL SRKNLGSIPR SRTTRDTRWS IYNKXEDDDD DVDDDDDEDD EGMEGSSDDE  60
DESDEEEGDS DDESDEDKNR KMPKVESSGK KRPLPDSSIK SPGTDKKAKV TPGGAQNQGT  120
DGGKKGGPKI SVSKEQIPSN KGQTPKAKGG VGAKESPKPS TTPGSGKKIG QHVCNTCSRN  180
FATESALTQH NAAKHGGK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.78550.0needle| stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P2L81e-76A9P2L8_PICSI; Uncharacterized protein