PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl016989

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MIKC_MADS

Protein Properties

Length: 237aa MW: 27683 Da PI: 10.0879

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55347786	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-24845	PU_ref	plantGDB	View CDS
PUT-175a-Picea_glauca-24846	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.2	2.8e-30	27	76	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien + rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++ Pgl016989 27 KRIENVTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSPRGKLYEFA 76 79***********************************************8 PP
2	K-box	82.4	1e-27	95	188	4	97
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++ +++++a++l++e+a++++ i+ L+ qR++lG++Les+ lk+L+qLe+q+e++l++iR++K+e+l++qi++l +ke+ l een L+k+ Pgl016989 95 DTTNTTKKQDAKYLKREIANMEETIKILELRQRKMLGKELESCALKDLNQLESQVERGLSRIRARKTEVLVDQIKQLERKERILTEENALLSKR 188 3445589999*******************************************************************************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	32.015	19	79	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.7E-41	19	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-31	21	41	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.09E-33	21	101	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	21	75	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.09E-43	21	92	No hit	No description
Pfam	PF00319	4.9E-27	28	75	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-31	41	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-31	56	77	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	3.3E-23	100	188	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	13.692	105	195	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MSLVIGFEEK GKVEERRRMV RGKTQLKRIE NVTSRQVTFC KRRNGLLKKA YELSVLCDAE 60 VALIVFSPRG KLYEFANPSM QKMLERYEKC SEENDTTNTT KKQDAKYLKR EIANMEETIK 120 ILELRQRKML GKELESCALK DLNQLESQVE RGLSRIRARK TEVLVDQIKQ LERKERILTE 180 ENALLSKRHG VDPRYVDGSV LTNPVSRFGS IQINEVETQL VIRQPNIRDH FLVNSFH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-20	19	99	1	82	MEF2 CHIMERA
6byy_B	2e-20	19	99	1	82	MEF2 CHIMERA
6byy_C	2e-20	19	99	1	82	MEF2 CHIMERA
6byy_D	2e-20	19	99	1	82	MEF2 CHIMERA
6bz1_A	1e-20	19	99	1	82	MEF2 CHIMERA
6bz1_B	1e-20	19	99	1	82	MEF2 CHIMERA
6bz1_C	1e-20	19	99	1	82	MEF2 CHIMERA
6bz1_D	1e-20	19	99	1	82	MEF2 CHIMERA
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020220768.1	2e-71	MADS-box protein SOC1
Refseq	XP_029127631.1	2e-71	MADS-box protein SOC1
Refseq	XP_029127634.1	2e-71	MADS-box protein SOC1
Refseq	XP_029127637.1	2e-71	MADS-box protein SOC1
Refseq	XP_029127638.1	2e-71	MADS-box protein SOC1
Refseq	XP_029127641.1	2e-71	MADS-box protein SOC1
Refseq	XP_029127643.1	2e-71	MADS-box protein SOC1
TrEMBL	D5A8T5	1e-150	D5A8T5_PICSI; Uncharacterized protein
STRING	XP_010255589.1	6e-68	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62165.3	2e-63	AGAMOUS-like 42