PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl016993

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HB-other

Protein Properties

Length: 267aa MW: 30084.7 Da PI: 10.1967

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55333246	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-15135	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.9	7e-08	141	181	13	53
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 e +F +nr ps++ +e LAk+ +++ +qV WF N R Pgl016993 141 EKFRVVFGENRFPSRSLKEGLAKEFDISFKQVHKWFDNARH 181 56667899******************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.7E-8	109	180	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.71E-8	124	184	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.807	126	186	IPR001356	Homeobox domain
CDD	cd00086	1.12E-5	128	180	No hit	No description
SMART	SM00389	2.8E-4	128	190	IPR001356	Homeobox domain
Pfam	PF00046	1.6E-5	141	181	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
LAASDEDSMS EDDEEWGPRK QLRKGKQFDV EQDVSSVSKL MQLNKDSVMK KKGKGPDVNS 60 SEDINLSKLN LCRKEDAEKV NEECKISKKA KHREGVPEED VAPSEFKAST KENTNQQEQL 120 GSPPVSAKKK VFSRLPTPAI EKFRVVFGEN RFPSRSLKEG LAKEFDISFK QVHKWFDNAR 180 HFARHQDGRK QVDNSDGSNE SISIIKDDNI TSEKVKVPDS AGKRNKDTKI VPSAERGKRK 240 GGEKHGIKDL KSPTSSGDKA KRQHRRN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.6425	0.0	root\| stem

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	2e-10	pathogenesis related homeodomain protein A