PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl017062
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ZF-HD
Protein Properties Length: 247aa    MW: 27163.7 Da    PI: 8.4936
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S29736366PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-7321PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.35.8e-3153104359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                   +rY+eC++NhAa++Ggha+DGCgEfmp+     + +alkCaACgCHRnFHRreve 
    Pgl017062  53 VLRYRECQRNHAANIGGHALDGCGEFMPA-----EDDALKCAACGCHRNFHRREVEG 104
                  679*************************9.....3579****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-1853114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.1E-2654102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.6E-2655102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.5456101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.608.1E-30171246IPR009057Homeodomain-like
SuperFamilySSF466894.93E-18172245IPR009057Homeodomain-like
TIGRFAMsTIGR015659.2E-24184240IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MPAPYGLYPN GNGNGNAAII MVLPHDESIS NPLNPTNPRN PMEAAAAPPP TKVLRYRECQ  60
RNHAANIGGH ALDGCGEFMP AEDDALKCAA CGCHRNFHRR EVEGDEQPPP TCECCLRKKR  120
GGASSSGPGS PVVPYYPLPL PHGSSAPHML MALSSGLTES DDPDGNTNNN SNNNLSHHHH  180
RGMKKRFRTK FSQDQKEKMY MFADKMGWRM QKQDEAIVQQ FCNEIGVGKG VLKVWMHNNK  240
HTLGKKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-221852421875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.94730.0root| vegetative bud
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827241.13e-64zinc-finger homeodomain protein 2
SwissprotA2YWA65e-51ZHD2_ORYSI; Zinc-finger homeodomain protein 2
SwissprotQ6ZB905e-51ZHD2_ORYSJ; Zinc-finger homeodomain protein 2
TrEMBLA9NWR90.0A9NWR9_PICSI; Uncharacterized protein
STRINGERM944781e-63(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-47homeobox protein 34
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]