PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl017137
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 279aa    MW: 32365.5 Da    PI: 10.5051
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55342278PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2224.2e-07130152123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C+ Cgk+F ++s+Lk H + H
  Pgl017137 130 HDCSECGKRFATPSSLKDHRNEH 152
                56******************998 PP
2zf-C2H214.69.6e-05158182123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                y C+  dC ++F++k +L rH+++H
  Pgl017137 158 YNCKfeDCAMRFKSKQLLCRHLKKH 182
                88**********************9 PP
3zf-C2H218.27e-06217240223
                EET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                +Cp   Cgk+F+   +L+ H rtH
  Pgl017137 217 VCPweGCGKRFKWTNSLQGHKRTH 240
                79999******************9 PP
4zf-C2H219.23.3e-06246270123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ++C+   Cg++F  k +L+rH+rtH
  Pgl017137 246 FQCTyqGCGRHFGYKVDLTRHLRTH 270
                89**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.8E-8127149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.58E-11128182No hitNo description
SMARTSM003550.0039130152IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.272130157IPR007087Zinc finger, C2H2
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-9150182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.013158182IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245158182IPR007087Zinc finger, C2H2
PROSITE patternPS000280160182IPR007087Zinc finger, C2H2
SMARTSM0035530186210IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.1E-6186208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.115186215IPR007087Zinc finger, C2H2
SuperFamilySSF576671.79E-17197251No hitNo description
Gene3DG3DSA:3.30.160.601.7E-16209238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.0E-4216240IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.96216245IPR007087Zinc finger, C2H2
PROSITE patternPS000280218240IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-16239272IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.67E-9241272No hitNo description
SMARTSM003554.5E-4246270IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.027246275IPR007087Zinc finger, C2H2
PROSITE patternPS000280248270IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
KRKKLKRLHL QVDSFVHQKL MRIACDQHNG SVEQFIIATL NASEVAGMSG KKAVIKKPTL  60
SKWKRTRFEQ MKGSETQELA MAFRLLAAST PGSVVTSEFL SIPWQELTMS QIEKMLEETK  120
KMLFLNEKVH DCSECGKRFA TPSSLKDHRN EHSGDKPYNC KFEDCAMRFK SKQLLCRHLK  180
KHECAHKCMF EGRGKRFAFR ERLIVHQKIH SNERPLVCPW EGCGKRFKWT NSLQGHKRTH  240
TGEKPFQCTY QGCGRHFGYK VDLTRHLRTH NGQPARASH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A3e-2712227314188Aart
2i13_B3e-2712227314188Aart
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002983078.21e-121zinc finger protein 26
TrEMBLA0A1Y1ISJ71e-114A0A1Y1ISJ7_KLENI; Uncharacterized protein
STRINGEFJ332481e-76(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.13e-24C2H2 family protein