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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Pgl017440 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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| Family | LBD | ||||||||
| Protein Properties | Length: 225aa MW: 25144.9 Da PI: 4.7349 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 48.5 | 2.5e-15 | 3 | 69 | 9 | 77 |
DUF260 9 rrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGav 77
+++C ++C++ f++++ +kf ++ +FGa nv+kl+++lp ++r da++s+vyeA a ++dPv G
Pgl017440 3 QKDCLDNCTILYRFASNDLNKFSIL--VFGACNVIKLVQDLPSNQRIDAINSMVYEASATLQDPVFGYX 69
799*******************985..9*************************************9976 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50891 | 9.023 | 1 | 95 | IPR004883 | Lateral organ boundaries, LOB |
| Pfam | PF03195 | 3.2E-13 | 3 | 68 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 225 aa Download sequence Send to blast |
MEQKDCLDNC TILYRFASND LNKFSILVFG ACNVIKLVQD LPSNQRIDAI NSMVYEASAT 60 LQDPVFGYXR ENTEASTPNI RPAITNNCNI VNDSENTFPA DPTSDCIPGF KNKDNPTIGT 120 SLNEDDEEDQ ERVHCGKRTK EKEINEMCRV GKCAKSKLEY IYNSAVRSVL WESWSRDCIC 180 TVQATGNSGA KLSFVEALLH EVSRSCNLSL LSRIAGYGTC HYPQE |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Pgl.31910 | 0.0 | vegetative bud | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A9P1U3 | 8e-34 | A9P1U3_PICSI; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT2G28500.1 | 9e-18 | LOB domain-containing protein 11 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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