PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl017521
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 367aa    MW: 41602.5 Da    PI: 6.3213
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55335928PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-181764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++v+ +G g+W+++++  g+ R++k+c++rw +yl
        Pgl017521 17 RGLWSPEEDEKLIRYVTTHGHGCWSAVPKQAGLQRCGKSCRLRWINYL 64
                     788*******************************************97 PP
2Myb_DNA-binding506.7e-1670113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ +E+  +++a++ lG++ W+ Iar+++ gRt++++k++w++
        Pgl017521  70 RGSFSLQEERTIIEAHRVLGNR-WAQIARHLP-GRTDNEVKNFWNS 113
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-27967IPR009057Homeodomain-like
PROSITE profilePS5129424.9771268IPR017930Myb domain
SuperFamilySSF466893.48E-2914111IPR009057Homeodomain-like
SMARTSM007175.1E-141666IPR001005SANT/Myb domain
PfamPF002491.2E-161764IPR001005SANT/Myb domain
CDDcd001674.63E-122064No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2468120IPR009057Homeodomain-like
SMARTSM007175.4E-1569117IPR001005SANT/Myb domain
PROSITE profilePS5129420.07469119IPR017930Myb domain
PfamPF002493.6E-1470113IPR001005SANT/Myb domain
CDDcd001678.27E-1172112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
ILCQMGHRCC NKQKVKRGLW SPEEDEKLIR YVTTHGHGCW SAVPKQAGLQ RCGKSCRLRW  60
INYLRPDLKR GSFSLQEERT IIEAHRVLGN RWAQIARHLP GRTDNEVKNF WNSCMRKELI  120
AQGIDPRTHG VISDGSHRPN SDLELSGAPL SGEILSKFID TRDEGLGENV GLPSYGLAPV  180
NAWIDRFLSY EQGQILQEDM DFQLPFATKD LRDGNMNGKS ETTFHAQENN GNVEFSTFEP  240
YFPFDQTLSA HVEQLDIGSS GHESHHPLIS PVNEEAAIRF NADHHLHMNP PSLEANTKPM  300
HVPKVCEIEL NEFNSQQLQA SNYHQYQNQY LISYSSSASS AYDEHNLDTN LSLDSSIPIG  360
IYFGMIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30171197108B-MYB
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.311570.0vegetative bud
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.14e-77myb domain protein 67