PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl017560
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 230aa    MW: 25447.7 Da    PI: 9.3423
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55351836PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-202575256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                y+GVr+++ +g+WvAeIr p++   r r +lg+f+tae+Aa a+++a+ +l+ge
  Pgl017560 25 LYRGVRQRH-WGKWVAEIRLPRN---RSRLWLGTFDTAEQAALAYDRAAYRLRGE 75
               59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.38E-322482No hitNo description
PROSITE profilePS5103223.2752582IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-232582IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-322582IPR001471AP2/ERF domain
SMARTSM003804.1E-362588IPR001471AP2/ERF domain
PfamPF008472.3E-142675IPR001471AP2/ERF domain
PRINTSPR003674.0E-112637IPR001471AP2/ERF domain
PRINTSPR003674.0E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
GLRPWPMKHA CKQGLRLCSN QPTKLYRGVR QRHWGKWVAE IRLPRNRSRL WLGTFDTAEQ  60
AALAYDRAAY RLRGEYARLN FPGLKQQQQL NHGSHSLSPS STSNLHSITD IRNQSGLLSV  120
LQSAVDAKLQ AICERSSAST KPSHEGKLGH NSLNQKISEV TPCKEKSPFE VKSECPEFSG  180
GDNNPVFAAQ NSDSALPCKS MTDAVCNMPS ISASASALAT TWTDVEEWIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-222482160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.224000.0cone
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601234.13e-44ethylene-responsive transcription factor RAP2-4
SwissprotQ8H1E42e-41RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A2D1VEK04e-47A0A2D1VEK0_PINPS; Uncharacterized protein (Fragment)
STRINGcassava4.1_010102m1e-43(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.11e-31ERF family protein
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]