PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl017606
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 242aa    MW: 27567.1 Da    PI: 5.0424
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55333936PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-151963147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg +++ E++l++d +   G++ W++Ia  ++ gRt++++k++w+++
        Pgl017606 19 RGVFSESEEKLIIDIHSHVGNR-WSKIATFLP-GRTDNEIKNYWNTH 63
                     899*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.87E-15973IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-231169IPR009057Homeodomain-like
PROSITE profilePS5129424.6041468IPR017930Myb domain
SMARTSM007176.3E-151866IPR001005SANT/Myb domain
PfamPF002492.3E-141963IPR001005SANT/Myb domain
CDDcd001672.77E-112264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MRKELQAEME NYPRPDLKRG VFSESEEKLI IDIHSHVGNR WSKIATFLPG RTDNEIKNYW  60
NTHIKKKLKR MGLDPATHRP ISETLPLPQI PPVAENNEAG GLLKPSEDGK PIQQELQAGS  120
VPLKHVKEEE SEQPSFLFNA ENSHIPCRMA EELQVPEMMN AQTPLLLHAE YWWEYGDIVA  180
GFAESLQDNT TSWVNPESIA GHLFESQRTV VPVPESSNSH LFLQSVDYFP QATSNKIFPL  240
DF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1416841108B-MYB
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-36myb domain protein 20