PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl017655
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 368aa    MW: 41310 Da    PI: 5.5215
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55339946PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.3e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT  Ed +l ++v+ +G g+W+  +++ g+ R++k+c++rw++yl
        Pgl017655 14 RGAWTSKEDMILSEYVRNHGDGRWRDLPQKAGLMRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding53.26.6e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eE+el+++++++lG++ W++Ia +++ gRt++++k++w++
        Pgl017655  67 RGNISPEEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                      7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.962961IPR017930Myb domain
SuperFamilySSF466896.12E-2812108IPR009057Homeodomain-like
SMARTSM007171.0E-91363IPR001005SANT/Myb domain
PfamPF002491.2E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-221568IPR009057Homeodomain-like
CDDcd001678.04E-81661No hitNo description
PROSITE profilePS5129426.85162116IPR017930Myb domain
SMARTSM007171.7E-1666114IPR001005SANT/Myb domain
PfamPF002493.3E-1567110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2669116IPR009057Homeodomain-like
CDDcd001678.36E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTSK EDMILSEYVR NHGDGRWRDL PQKAGLMRCG KSCRLRWLNY  60
LRPDIKRGNI SPEEEELIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT RLNKKMLSVT  120
QSQHNNRKNL KTGSKSPALK NPVFKTIPVR IKKAVRHREI ERLRGSNGYG CSYLSSDKAF  180
KSCNVKETTN SSKSCCDLLV NDSIIADDSH NIAFAAADNL DEVEAGNCTF PISCLADERS  240
PHFDYFAGLR EGLLSLNELS SPDCILLSSP VDSGSEEXLL SSPVDSGSEE FCREPATLAA  300
ETTEFEVACF DQSNVQGVNS FTDAVDQGME DFFNNTEQVD WIHELDLQKG SPQWLGSSLL  360
ESEEEWKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9111e-137A0A167V911_PICAB; Transcription factor MYB31
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-54myb domain protein 3