PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl017683
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 244aa    MW: 27899.6 Da    PI: 6.5117
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S40969659PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.6e-121663248
                     SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +WTt Ed +l d+++ +G +  W++   + g++R++k+c++rw +yl
        Pgl017683 16 AAWTTNEDMILRDYINIHGLEgGWRSLRDKTGLNRSGKSCRLRWTNYL 63
                     68*****************8899***********************97 PP
2Myb_DNA-binding55.41.4e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +t+E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l
        Pgl017683  69 RGNISTDEEELIIRLHHLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 114
                      7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5009010.1971063IPR017877Myb-like domain
SMARTSM007173.3E-81465IPR001005SANT/Myb domain
SuperFamilySSF466893.21E-2514110IPR009057Homeodomain-like
PfamPF002496.1E-101663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-191770IPR009057Homeodomain-like
CDDcd001672.04E-61763No hitNo description
PROSITE profilePS5129426.38664118IPR017930Myb domain
SMARTSM007172.5E-1668116IPR001005SANT/Myb domain
PfamPF002491.1E-1569114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2571118IPR009057Homeodomain-like
CDDcd001676.59E-1273114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGGSRRCYRD EGFNRAAWTT NEDMILRDYI NIHGLEGGWR SLRDKTGLNR SGKSCRLRWT  60
NYLRPNIKRG NISTDEEELI IRLHHLLGNR WSLIAGRLPG RTDNEIKNYW NTHLRKKIGA  120
LYKRDQIEAK MTEEDRDVSP GFDLVGANAK KIAVNIETNV TDAQSFDEQS RTLLEEDLTM  180
EICSHPHHNM TSLMLEDEEL IFKQNGIMSE GVLGLDCAIQ FPLSPISSSI EFQMSCLFST  240
VGHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-201311825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902067.12e-55transcription factor TT2-like
TrEMBLA0A1W6EUB57e-55A0A1W6EUB5_LOTCO; R2R3-MYB transcriptional factor MYB14
TrEMBLF8TJT08e-56F8TJT0_PINRE; MYB-like protein (Fragment)
STRINGevm.model.supercontig_28.715e-55(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.14e-44MYB family protein