PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl017823
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 231aa    MW: 25289.5 Da    PI: 8.6395
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55346931PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05203221321
                ETTTTEEESSHHHHHHHHH CS
    zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                C+ Cg+ F ++ +L rHi+
  Pgl017823 203 CETCGENFDSRNQLFRHIS 221
                *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.349201230IPR007087Zinc finger, C2H2
PROSITE patternPS000280203225IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
XDSDMDDEAS LLEAMLKTLS AKRGANNVYR DTARTEADGT DYNYRGNDEE SSSTNQRSRH  60
SNKVEPTTVL AQPDTDDGTQ NDMGISRSAQ RQGYKDTVKQ KKKQPAGADK NLATYIVKEV  120
ELRSEDISGD RQQGTESPFH VDKQADELEV DKEKGRLPKP AKQSVEKKSA SANTSANDIS  180
AKVKKQVKGK KGKGVAKSTG NLCETCGENF DSRNQLFRHI SGTGHAMLKA S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.118830.0root| somatic embryo| stem