PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl017830
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family DBB
Protein Properties Length: 291aa    MW: 31799.7 Da    PI: 6.093
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55341013PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-1973PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.11.6e-07447542
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                C+ +e+ e+++ C  ++  lC  C  + H        H++vpl
  Pgl017830  4 QCDVCENAEATFLCCADEAALCSVCDNKVHAAnklaskHQRVPL 47
               7*****************************66899999999986 PP
2zf-B_box32.12.3e-105394237
   zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
               + +kC+ ++ek   +fC +++ llC++C +++H +       H
  Pgl017830 53 QSPKCDICQEKTGYFFCLEDRALLCRQCDVSIH-SlnnlvaaH 94
               789******************************.434455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.665147IPR000315B-box-type zinc finger
SMARTSM003361.6E-11147IPR000315B-box-type zinc finger
CDDcd000218.65E-8347No hitNo description
PfamPF006433.1E-6447IPR000315B-box-type zinc finger
SuperFamilySSF578455.26E-54787No hitNo description
PROSITE profilePS501199.4285299IPR000315B-box-type zinc finger
SMARTSM003364.9E-155299IPR000315B-box-type zinc finger
PfamPF006431.7E-85395IPR000315B-box-type zinc finger
CDDcd000211.38E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MKVQCDVCEN AEATFLCCAD EAALCSVCDN KVHAANKLAS KHQRVPLINP SSQSPKCDIC  60
QEKTGYFFCL EDRALLCRQC DVSIHSLNNL VAAHQRFLVT GVKVGLEPSN TISSSTNTFA  120
QSSDATHQKP QTLKNGPREV SATSHQGIQK GAGGGGMSRK GTVSEYFSEL LPLLRMDEFL  180
NLPELDNGYS FDEAGSSRAD NSNFVEEWTA NSLSMEEVNA ENCLAQVPEM PSPPTASGLY  240
WPRRVIQHPK EGKRREDLAI FGIDDASLVP DIGCRSSPPD SPLSKRRRLH A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248254PKEGKRR
2284288KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.31030.0needle| somatic embryo| stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625544.11e-80PREDICTED: B-box zinc finger protein 22
TrEMBLB8LM300.0B8LM30_PICSI; Uncharacterized protein
STRINGXP_009625544.15e-80(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-69light-regulated zinc finger protein 1