PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl017859
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24233.6 Da    PI: 6.8902
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55337202PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.34.2e-231261251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               rien+  r+ +f kRr g++KKAeELS+LCda v v++fs  gkl eys+
  Pgl017859 12 RIENEASRNASFRKRRRGLMKKAEELSILCDASVGVVVFSAAGKLSEYSN 61
               8***********************************************95 PP
2K-box48.63.5e-171051851999
      K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                +e+++L +  + L++e R++ Ge+L+ ++l eLq+L+++Le +lk++  ++ el ++++ e q k  el ee+ +Lr++l+
  Pgl017859 105 TEVTRLHQYHQVLEHEYRQMSGENLGGINLGELQELQDHLELGLKRVQLRQCELHTKKMAEIQSKGLELVEEHIMLRQQLK 185
                799***************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-28162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.245363IPR002100Transcription factor, MADS-box
CDDcd002651.72E-30475No hitNo description
SuperFamilySSF554557.59E-26580IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-22525IPR002100Transcription factor, MADS-box
PfamPF003194.4E-221259IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-222540IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-224061IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.922100190IPR002487Transcription factor, K-box
PfamPF014863.3E-14104184IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRGLGKTEI RRIENEASRN ASFRKRRRGL MKKAEELSIL CDASVGVVVF SAAGKLSEYS  60
NTSELKMIIE RYMKYLGHAE NMSVSYSWVR NDNPGSGFQQ MDAITEVTRL HQYHQVLEHE  120
YRQMSGENLG GINLGELQEL QDHLELGLKR VQLRQCELHT KKMAEIQSKG LELVEEHIML  180
RQQLKAFFER EEAPDEATSQ LETLPQYKFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12327RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.308960.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K0M7C69e-68A0A0K0M7C6_PINTB; MADS1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.12e-19MIKC_MADS family protein