PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl017872
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 302aa    MW: 33622 Da    PI: 6.177
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55330432PU_refUnigeneView CDS
PUT-175a-Picea_glauca-12235PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-11136183455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++iN+++  L++l+P++    +k   Ka +L + ++Y++sLq
  Pgl017872 136 SHSLAERVRREKINQRMKFLQDLVPTC----NKVTGKAVMLDEIINYVQSLQ 183
                8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.54E-11130187No hitNo description
SuperFamilySSF474595.63E-18130201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-18132200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.967132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-8136183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-11138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
GLVSGGEFSP FNNIDRNSSE NVVCGASNLP PIVGGVQQGG GENMSVFSEP TKCVDDGNGK  60
KRRAKSLTSA ENSKEPEEAK AKRCRLGESS EIDDDDNNDE TSDSNSKKGK EKNSNVSQKD  120
DNYIHVRARR GQATDSHSLA ERVRREKINQ RMKFLQDLVP TCNKVTGKAV MLDEIINYVQ  180
SLQHQVEFLS MKLATVNPKL DFNVDNFFAK EMSGSFSSKG MSPTFFHLDQ LKQASLQTVP  240
SPGSDIPSTM SSVDSAEMFD GTNFQRQEGW DSELQNMYNM GLLQSRLQQH QHQQRPLXYS  300
IH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15964KKRRAK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006878569.16e-63transcription factor bHLH63 isoform X2
RefseqXP_020522826.11e-63transcription factor bHLH63 isoform X3
SwissprotQ9CAA96e-56BH049_ARATH; Transcription factor bHLH49
TrEMBLA9NUN30.0A9NUN3_PICSI; Uncharacterized protein
STRINGERM947142e-62(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.22e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]