PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl017985

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HB-other

Protein Properties

Length: 176aa MW: 19724.8 Da PI: 4.9605

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55332273	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.4	2.8e-19	49	99	1	51
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNr 51 +++ +++t++q++e+e +F+++++p+ ++r+eL+++lgL+ qVk+WFqN+ Pgl017985 49 KKRYHRHTQHQIQEMEMFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNK 99 678899********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-21	34	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.06E-17	36	99	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.641	46	106	IPR001356	Homeobox domain
SMART	SM00389	4.0E-15	47	110	IPR001356	Homeobox domain
CDD	cd00086	1.95E-17	49	99	No hit	No description
Pfam	PF00046	6.8E-17	49	99	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MAEGQFDMSQ TADSEIAKIR EEEFESKSGS DNVEGASGED QDGERRPRKK RYHRHTQHQI 60 QEMEMFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKX HSDEDPILPD SPKCMAVTNS 120 GINDLGTGGS LLTVAFQILV DSVPTAKLSL GSVATVNSLI SCTVDRIKAA VMRENP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006826512.2	3e-51	homeobox-leucine zipper protein ROC2 isoform X2
Swissprot	Q0J9X2	2e-42	ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBL	Q9FR59	2e-62	Q9FR59_PICAB; Homeobox 1
STRING	ERM93749	1e-50	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05230.3	7e-38	homeodomain GLABROUS 2

Publications ? help Back to Top
Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]