PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G006100.1
Common NamePHAVU_001G006100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 286aa    MW: 32740.7 Da    PI: 4.3984
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G006100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.8e-08158199955
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r RR++i ++ +eL +l+P       +K++ a++L  A +Y+k Lq
  Phvul.001G006100.1 158 ARERRRKITNKTQELGRLVPGG-----TKMNTADMLNAAAKYVKFLQ 199
                         699*****************87.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.06E-11147209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.57149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-11152208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.14E-9155202No hitNo description
PfamPF000101.0E-5159199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MALSKFFNWN TLQLSDSETS TFNEAMPEEV APNIQHLFPY SDESLFLSNT LFENYIDPNA  60
AFIYPSEIQS PFDPFISLPH HHIFPTHEDY NHFPSSKRQK LCWEEEQHEL TTPTIDEFGN  120
CYSFQSEETQ QKQQLFCMDA QCEENGKERT ISPQSVAARE RRRKITNKTQ ELGRLVPGGT  180
KMNTADMLNA AAKYVKFLQA QVGMLELMNS LEQEDEDEAA PPSEILHALV VSPFVQEKLY  240
VGEKCFLPKE TVTTLTNLED IQSIPTMLEE LQQHIGIDLN KPKQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G006100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150365e-60AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160660.10.0hypothetical protein PHAVU_001G006100g
TrEMBLV7CRC40.0V7CRC4_PHAVU; Uncharacterized protein
STRINGXP_007160660.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.18e-27bHLH family protein