PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G007100.1
Common NamePHAVU_001G007100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 409aa    MW: 44539.7 Da    PI: 9.518
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G007100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-05168190223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          C++Cg++F+  ++L+ H+ + H
  Phvul.001G007100.1 168 ACSHCGEVFPKMESLELHQAVrH 190
                         6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280167190IPR007087Zinc finger, C2H2
PROSITE profilePS501578.829167195IPR007087Zinc finger, C2H2
SuperFamilySSF563996.14E-26192404No hitNo description
Gene3DG3DSA:3.90.228.103.8E-18193404IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MALLTSLPEH STTPKRHKRK PQQQQHQKQK QKQKQKPPSS WDQIKNLLTC KQMEGSRVHD  60
PSKGYSRIGS SCSSICSFRD VVHGNTRVVH RSDNSSPESS SLGQETGLLT RKPVTASTRS  120
TAAKSNAGTT YTSSSSRGMQ FRKLSGCYEC HMIIDPSRLP VARSTVCACS HCGEVFPKME  180
SLELHQAVRH AVSELEPEDS GRNIVEIIFK SSWLKKDNPI CKIERILKVH NTQRTIQRFE  240
ECRDTVKNRA LSSTKKNPRC AADGNELLRF HCTTLTCALG ARGSSSLCAS VPGCGVCTII  300
RHGFQGGGGG DHAKVKGVGT TASSGRAHDS VVCGDGTRRA MLVCRVIAGR VKRVAEDTPP  360
SEEEHVSVAS YDSVAGYAGI YSNLEELVVF NPKAILPCFV VIYKVPSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11320PKRHKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G007100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160670.10.0hypothetical protein PHAVU_001G007100g
TrEMBLV7CRD40.0V7CRD4_PHAVU; Uncharacterized protein
STRINGXP_007160670.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-163C2H2-like zinc finger protein