PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G011100.1
Common NamePHAVU_001G011100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 639aa    MW: 70828 Da    PI: 6.2087
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G011100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.2e-094014381954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +e+  LA+++gLt +qV +WF N R +
  Phvul.001G011100.1 401 FEHflHPYPKDSEKIMLARQTGLTRNQVANWFINARVR 438
                         665559******************************88 PP
2BELL124.15.5e-40272343172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         erq+l  kk+kLl++l+eVdkrY+qy++q+q+v+ssF++vag+g+++pYt+lAl++iSrhFrcL+dai++qi
  Phvul.001G011100.1 272 ERQNLLDKKTKLLTMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGASEPYTALALRTISRHFRCLRDAISGQI 343
                         6899999****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-60191341IPR006563POX domain
PfamPF075261.2E-49197340IPR006563POX domain
PROSITE profilePS5007112.39379442IPR001356Homeobox domain
SMARTSM003892.5E-9382446IPR001356Homeobox domain
CDDcd000863.57E-12382443No hitNo description
SuperFamilySSF466894.23E-17383449IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-27385447IPR009057Homeodomain-like
PfamPF059203.1E-17399438IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MYSDQAFSSG PYADILSGNP LLPHNYSETV GEHNELKFIS SMRNTMTVQP IDEHSNAAPT  60
ADQNSFTNAG DSHAHLVPRT TQLGLVNSEQ NVQNQGLSLS LGSVMPSIAS VPTFPYQYPG  120
AGFSSLMNAS VQNLRGTSSL KDDEASLQRE LRNAECMASL ASCGFHKREG LLYTPQHPSM  180
CLSEGQSDGS LGFSSNVLNS QYLKAAQELL DEIVNVRKAL KQTGLEKQQS FRDIGLDGSK  240
DSDGKSTSQT GQISSCPNSS AANSSCELSP AERQNLLDKK TKLLTMLDEV DKRYRQYCHQ  300
MQIVVSSFDM VAGCGASEPY TALALRTISR HFRCLRDAIS GQIQVTQRSL GEQEGIPRLR  360
YVDQQLRQQK ALQQLGVMRQ AWRPQRGLPE TSVSILRAWL FEHFLHPYPK DSEKIMLARQ  420
TGLTRNQVAN WFINARVRLW KPMVEEIYKE EFGVSEMSSN LLSSENTLKA PRDDVQSSDS  480
KREESLDNLI KVDDSVIQHH GLKLDHASEL DRGIQSGNHG ENAMDPTIGK LQGDQRFNIN  540
NNNSPYYGEG CIISPTPATY DLSELGNIGV GGQVSLALEL RNYESEGFGV SNDEMHRRRK  600
KTMASSSPEA DLLDYHFTDQ GKQQNKFGNP HLLHEFVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-16388446563Homeobox protein Meis2
4xrm_B2e-16388446563Homeobox protein Meis2
4xrs_A2e-16388445158Homeobox protein Meis1
4xrs_B2e-16388445158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G011100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160717.10.0hypothetical protein PHAVU_001G011100g
SwissprotQ9FXG81e-110BLH10_ARATH; BEL1-like homeodomain protein 10
TrEMBLV7CUZ50.0V7CUZ5_PHAVU; Uncharacterized protein
STRINGXP_007160717.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.19e-95BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]