PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G018500.1
Common NamePHAVU_001G018500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 594aa    MW: 66278.5 Da    PI: 8.5514
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G018500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.56e-1920106799
                         .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          s++++s+rl +p  f+ +++g + +s  l+l  +sg++W+v+l   k+++  ++  GW++Fv ++ L+ gD +vF+++g+  f  +v+vf
  Phvul.001G018500.1  20 FSSAFSSHRLKIPDGFVCRMEGRTYGS--LSLIGPSGNVWTVQL--LKQDNDLFFHHGWSSFVVDHSLECGDLLVFRYEGHLHF--TVQVF 104
                         3999************99999997775..***************..********************************987666..99999 PP

                         -S CS
                  B3  98 rk 99 
                         +k
  Phvul.001G018500.1 105 DK 106
                         97 PP
2B345.61.3e-14254346196
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         f+ ++++ +v+ s  l +p +f  +h   ++++++++l +++g+ W+v+    ++   +++l +GW  Fv+ n + +gD+++F+l+++ e 
  Phvul.001G018500.1 254 FVRIMKSFNVSGSYTLNIPYQFSMAHL--PNCKIKIILHNLKGEHWTVNSVPtTRVHTSHTLCGGWMAFVRGNSITVGDICIFELVHKCEL 342
                         556667778888899*******98996..46999***************954566666799***********************9986555 PP

                         ..EEEE CS
                  B3  91 elvvkv 96 
                           +v++
  Phvul.001G018500.1 343 --RVHI 346
                         ..5554 PP
3B349.48.3e-16474565195
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         f+k++++ +v+ s  l +p +f ++h   ++ +++++l++++g+ W+v+   + k+++ +++ +GW  Fv++n+++ gD+++F+l+ +se 
  Phvul.001G018500.1 474 FVKIMKKFNVSGSYTLKIPYQFSAAHL--PTYKTEVILRNSRGECWTVNSVPDAKGRTvHTFCGGWMAFVRDNDINFGDTCIFELVTQSEM 562
                         89999999***************9994..334569***************77666666799***********************9865444 PP

                         ..EEE CS
                  B3  91 elvvk 95 
                            v 
  Phvul.001G018500.1 563 --QVY 565
                         ..444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2112109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.84614107IPR003340B3 DNA binding domain
CDDcd100172.25E-1714105No hitNo description
SuperFamilySSF1019367.06E-2219112IPR015300DNA-binding pseudobarrel domain
PfamPF023628.3E-1620106IPR003340B3 DNA binding domain
SMARTSM010194.2E-1220107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.6E-21245347IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-22247348IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-17252346No hitNo description
PfamPF023622.9E-11254346IPR003340B3 DNA binding domain
SMARTSM010193.8E-9254350IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266254350IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-23466567IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-23467568IPR015300DNA-binding pseudobarrel domain
CDDcd100173.73E-19472566No hitNo description
PfamPF023622.9E-13474563IPR003340B3 DNA binding domain
SMARTSM010199.1E-12474570IPR003340B3 DNA binding domain
PROSITE profilePS5086313.126474570IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MGCDCGGKLN LRKPHFYEVF SSAFSSHRLK IPDGFVCRME GRTYGSLSLI GPSGNVWTVQ  60
LLKQDNDLFF HHGWSSFVVD HSLECGDLLV FRYEGHLHFT VQVFDKDACE KEAAFISECS  120
QSSSDFEAIT GQKRGTKESS SLDIAFDGVS KKMRGCKYEN QEHEPGFVGK DLLRYEVVRP  180
IRMFRETEET SKACLANDAL VPFHTDNRNE EAAIMYRSGK EDGSYFLGGV SLSNVSAQDE  240
KKVAQSFTSD YPYFVRIMKS FNVSGSYTLN IPYQFSMAHL PNCKIKIILH NLKGEHWTVN  300
SVPTTRVHTS HTLCGGWMAF VRGNSITVGD ICIFELVHKC ELRVHIAGVG NDGLDCQVGR  360
VNAGHVGPPR YMPTNAKVNS KCIRKVDVSN KKWPKIGQET VLSIDLKKSG RASNASKHMG  420
LCPQSKVAHK KLATPRRHRV EDELSSQAKA GLRMLFALDE QRVAQAFSSP FPSFVKIMKK  480
FNVSGSYTLK IPYQFSAAHL PTYKTEVILR NSRGECWTVN SVPDAKGRTV HTFCGGWMAF  540
VRDNDINFGD TCIFELVTQS EMQVYISGVG KEGPDHQNGH IKLDRLANLP STC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G018500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160811.10.0hypothetical protein PHAVU_001G018500g
RefseqXP_007160812.10.0hypothetical protein PHAVU_001G018500g
TrEMBLV7CV770.0V7CV77_PHAVU; Uncharacterized protein
STRINGXP_007160811.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-19B3 family protein