PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G018500.3
Common NamePHAVU_001G018500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 560aa    MW: 62521.4 Da    PI: 8.6742
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G018500.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.5e-1920106799
                         .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          s++++s+rl +p  f+ +++g + +s  l+l  +sg++W+v+l   k+++  ++  GW++Fv ++ L+ gD +vF+++g+  f  +v+vf
  Phvul.001G018500.3  20 FSSAFSSHRLKIPDGFVCRMEGRTYGS--LSLIGPSGNVWTVQL--LKQDNDLFFHHGWSSFVVDHSLECGDLLVFRYEGHLHF--TVQVF 104
                         3999************99999997775..***************..********************************987666..99999 PP

                         -S CS
                  B3  98 rk 99 
                         +k
  Phvul.001G018500.3 105 DK 106
                         97 PP
2B345.71.2e-14220312196
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         f+ ++++ +v+ s  l +p +f  +h   ++++++++l +++g+ W+v+    ++   +++l +GW  Fv+ n + +gD+++F+l+++ e 
  Phvul.001G018500.3 220 FVRIMKSFNVSGSYTLNIPYQFSMAHL--PNCKIKIILHNLKGEHWTVNSVPtTRVHTSHTLCGGWMAFVRGNSITVGDICIFELVHKCEL 308
                         556677778888899*******98996..46999***************954566666799***********************9986555 PP

                         ..EEEE CS
                  B3  91 elvvkv 96 
                           +v++
  Phvul.001G018500.3 309 --RVHI 312
                         ..5554 PP
3B349.57.5e-16440531195
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         f+k++++ +v+ s  l +p +f ++h   ++ +++++l++++g+ W+v+   + k+++ +++ +GW  Fv++n+++ gD+++F+l+ +se 
  Phvul.001G018500.3 440 FVKIMKKFNVSGSYTLKIPYQFSAAHL--PTYKTEVILRNSRGECWTVNSVPDAKGRTvHTFCGGWMAFVRDNDINFGDTCIFELVTQSEM 528
                         89999999***************9994..334569***************77666666799***********************9865444 PP

                         ..EEE CS
                  B3  91 elvvk 95 
                            v 
  Phvul.001G018500.3 529 --QVY 531
                         ..444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-2112109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.84614107IPR003340B3 DNA binding domain
CDDcd100171.96E-1714105No hitNo description
SuperFamilySSF1019366.47E-2219112IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.2E-1220107IPR003340B3 DNA binding domain
PfamPF023627.6E-1620106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-21211313IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-22213314IPR015300DNA-binding pseudobarrel domain
CDDcd100171.44E-17218312No hitNo description
SMARTSM010193.8E-9220316IPR003340B3 DNA binding domain
PfamPF023622.6E-11220312IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266220316IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-23432533IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-23433534IPR015300DNA-binding pseudobarrel domain
CDDcd100173.21E-19438532No hitNo description
SMARTSM010199.1E-12440536IPR003340B3 DNA binding domain
PfamPF023622.6E-13440529IPR003340B3 DNA binding domain
PROSITE profilePS5086313.126440536IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MGCDCGGKLN LRKPHFYEVF SSAFSSHRLK IPDGFVCRME GRTYGSLSLI GPSGNVWTVQ  60
LLKQDNDLFF HHGWSSFVVD HSLECGDLLV FRYEGHLHFT VQVFDKDACE KEAAFISECS  120
QSSSDFEAIT GQKRGKDLLR YEVVRPIRMF RETEETSKAC LANDALVPFH TDNRNEEAAI  180
MYRSGKEDGS YFLGGVSLSN VSAQDEKKVA QSFTSDYPYF VRIMKSFNVS GSYTLNIPYQ  240
FSMAHLPNCK IKIILHNLKG EHWTVNSVPT TRVHTSHTLC GGWMAFVRGN SITVGDICIF  300
ELVHKCELRV HIAGVGNDGL DCQVGRVNAG HVGPPRYMPT NAKVNSKCIR KVDVSNKKWP  360
KIGQETVLSI DLKKSGRASN ASKHMGLCPQ SKVAHKKLAT PRRHRVEDEL SSQAKAGLRM  420
LFALDEQRVA QAFSSPFPSF VKIMKKFNVS GSYTLKIPYQ FSAAHLPTYK TEVILRNSRG  480
ECWTVNSVPD AKGRTVHTFC GGWMAFVRDN DINFGDTCIF ELVTQSEMQV YISGVGKEGP  540
DHQNGHIKLD RLANLPSTC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G018500.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160809.10.0hypothetical protein PHAVU_001G018500g
RefseqXP_007160810.10.0hypothetical protein PHAVU_001G018500g
TrEMBLV7CRR50.0V7CRR5_PHAVU; Uncharacterized protein
STRINGXP_007160811.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-19B3 family protein