PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G019200.1
Common NamePHAVU_001G019200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 182aa    MW: 20280.7 Da    PI: 10.4756
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G019200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-153883147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W  eEd  l  +v+ +G+++W++I+r++  gR++k+c++rw + 
  Phvul.001G019200.1 38 KGAWGVEEDRVLTGLVEAHGPRNWALISRHVK-GRSGKSCRLRWCNQ 83
                        799****************************9.***********985 PP
2Myb_DNA-binding46.96.5e-1592132345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         ++Tt E   +++a+ +lG++ W+tIar+++ gRt++ +k++w+
  Phvul.001G019200.1  92 PFTTRENAVILHAHDRLGNK-WATIARMLP-GRTDNAVKNHWN 132
                         89******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.5683388IPR017930Myb domain
SuperFamilySSF466897.86E-2936131IPR009057Homeodomain-like
SMARTSM007171.8E-133786IPR001005SANT/Myb domain
PfamPF002499.0E-153883IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-213991IPR009057Homeodomain-like
CDDcd001672.55E-114082No hitNo description
SMARTSM007177.8E-1189137IPR001005SANT/Myb domain
PROSITE profilePS5129415.1290139IPR017930Myb domain
CDDcd001676.12E-892135No hitNo description
Gene3DG3DSA:1.10.10.603.5E-1992137IPR009057Homeodomain-like
PfamPF002491.0E-1192132IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
IMKMRGTKQC SSSSSHSSTS EFNPSNNDHN NNTCVRKKGA WGVEEDRVLT GLVEAHGPRN  60
WALISRHVKG RSGKSCRLRW CNQLSPAVEH RPFTTRENAV ILHAHDRLGN KWATIARMLP  120
GRTDNAVKNH WNATLKRVPS QRCRFGDEPG CGGSTAGFRE VRECVSYSFS DNFGSNKELP  180
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-37381374103MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-363813758157MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-363813758157MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-37381374103C-Myb DNA-Binding Domain
1msf_C3e-37381374103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G019200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160819.11e-133hypothetical protein PHAVU_001G019200g, partial
SwissprotO231601e-48MYB73_ARATH; Transcription factor MYB73
TrEMBLV7CTV81e-132V7CTV8_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007160819.11e-133(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.19e-51myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]