PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G026800.1
Common NamePHAVU_001G026800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 347aa    MW: 38310 Da    PI: 4.4934
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G026800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.5e-102773171055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Phvul.001G026800.1 277 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVNYVKFLQ 317
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-14267331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-12272326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-11273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.87E-12276321No hitNo description
PfamPF000108.3E-8277317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEPVGAFPDG EWDCFRGMFA SEDHFTSEFP LLLGGGDELN IVTEQANFCG APEAGENELM  60
FYSLDAHNSN SSQYISQESS YSNSSNCSGD DTVFIANPGS SNYYFSYPDH MSPNNACVYS  120
LDEKHFAPFA PSLANIATEE SVKLYEDLAS DGLENSECNQ MEPIVFPTKR KNDVPADGKI  180
NNRSENHKKK PRVSKDVQGC MKNKWSKKNQ KNDSNREDAE ETNAGSDGQS SSSNMSEDDN  240
KENVGGATSE SKSVLNSNGK TRASRGSATD PQSLYARKRR ERINERLRIL QNLVPNGTKV  300
DISTMLEEAV NYVKFLQLQI KLLSSDDLWM YAPLAYNGLD IGLNLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G026800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160904.10.0hypothetical protein PHAVU_001G026800g
TrEMBLV7CU310.0V7CU31_PHAVU; Uncharacterized protein
STRINGXP_007160904.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-42bHLH family protein