PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G035600.1
Common NamePHAVU_001G035600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 291aa    MW: 32465.6 Da    PI: 10.096
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G035600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.42e-18153186134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         Cs C+t++TplWR+gp g+k+LCnaCG+++rk +
  Phvul.001G035600.1 153 CSDCNTSTTPLWRSGPKGPKSLCNACGIRQRKAR 186
                         *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.086147183IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-12147187No hitNo description
SMARTSM004019.9E-19147198IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.3E-15151186IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.35E-13152189No hitNo description
PROSITE patternPS003440153178IPR000679Zinc finger, GATA-type
PfamPF003202.5E-16153186IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MTPYSLHSPS PSMQPQTQIF ISPTNQDCPT FFNIFDPRKT IDIGAFRQNY QQDEMVLHDG  60
SSSNNNLNSP EPVMVDPISS TSEGNLASYK MDDEDIKNGH GSGKWMSSKM RLMRKMMRRS  120
MSPTTDRLNP QGQESRYSQR SPRNNTSNTT RVCSDCNTST TPLWRSGPKG PKSLCNACGI  180
RQRKARRAMA EASNDLVTPI NSVCAKTRVH NKEKKSRANH FAQFKNKYKS TTSTVTATAG  240
SSEGVRKIEY FKDIAISLRS KNSSLNQVFP RDEVAEAAML LMELSCGFVH *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G035600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-139AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161012.10.0hypothetical protein PHAVU_001G035600g
TrEMBLV7CVQ40.0V7CVQ4_PHAVU; Uncharacterized protein
STRINGXP_007161012.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.13e-18GATA transcription factor 16