PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G036500.1
Common NamePHAVU_001G036500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 398aa    MW: 43884.5 Da    PI: 9.7651
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G036500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-057092123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C k F r  nL+ H r H
  Phvul.001G036500.1 70 FVCEICQKGFQRDQNLQLHRRGH 92
                        89*******************88 PP
2zf-C2H212.90.00033146168123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H + +
  Phvul.001G036500.1 146 WKCEKCSKRYAVQSDWKAHSKIC 168
                         58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.97E-76992No hitNo description
Gene3DG3DSA:3.30.160.602.7E-56992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0327092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6587092IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355110111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.2E-5134167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.97E-7141166No hitNo description
SMARTSM00355130146166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSNLTSASSE ISASSGIRND NGFFHAHQHS STSINQEPQP KKKRSLPGHP DPDAEVIALT  60
PQTLLATNRF VCEICQKGFQ RDQNLQLHRR GHNLPWKLKK KNSKEVRKKV YVCPEATCVH  120
HDPSRALGDL TGIKKHFFRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT REYKCDCGTL  180
FSRRDSFITH RAFCDALAQE SGRAVNPHSL LSSHSQFGSH ALHFQAPSSL VMKREQEFNL  240
LGQEIPSWLS SPTVLEESLH TQTPRTTSDF SSTPHLFPTH SLFNHDQNPS PTSAPTSFLP  300
SLSSFHYSTA SPHMSATALL QKASQIGVTV SAASQGMIVR PHLLVQQVHV PQCTTTTTTT  360
TTGYNNMASS SPLSGMLMAI PSREQIGTHG FAPGLAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-35142203364Zinc finger protein JACKDAW
5b3h_F5e-35142203364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196108KLKKKNSKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G036500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161022.10.0hypothetical protein PHAVU_001G036500g
SwissprotQ9SCQ61e-115IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLV7CVR40.0V7CVR4_PHAVU; Uncharacterized protein
STRINGXP_007161022.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-109indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]