PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G042100.1
Common NamePHAVU_001G042100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 270aa    MW: 30483.6 Da    PI: 7.6615
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G042100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.74.9e-28107165158
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                         ++Dgy+WrKYGqK+ k++  pr+Y+rC++a  Cp+kkkv+r+ +d+++++ tY geHnh
  Phvul.001G042100.1 107 VKDGYQWRKYGQKVTKDNASPRAYFRCSMApICPAKKKVQRCLHDKSILVATYDGEHNH 165
                         58***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-28102166IPR003657WRKY domain
PROSITE profilePS5081123.72102168IPR003657WRKY domain
SuperFamilySSF1182903.27E-24103166IPR003657WRKY domain
SMARTSM007748.1E-32107167IPR003657WRKY domain
PfamPF031064.4E-23108165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MLVQVLTTAN MVDEKVEALK SELERVREEN NALRVMLEVL SSKYTVLKSH LQEINKEQHK  60
GMSSNQRGSV TEPITDANKR RRLEFPTAKK PLQIFVRTLP TDDSLIVKDG YQWRKYGQKV  120
TKDNASPRAY FRCSMAPICP AKKKVQRCLH DKSILVATYD GEHNHGALHE SSSSTPRGSS  180
VAKQLPSMAN DKEAMDILAL SRWSQTDSRH IEEVMHQDNY GSNIKVEEYV SSLIKDPEFT  240
MSLAEAVARS ITGEIKQQDL DLNLNIPEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-181061651371WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17882KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G042100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753490.0EU375349.1 Glycine max transcription factor (WRKY63) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161093.10.0hypothetical protein PHAVU_001G042100g
TrEMBLV7CSB80.0V7CSB8_PHAVU; Uncharacterized protein
STRINGXP_007161093.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-45WRKY DNA-binding protein 40