PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G042100.3
Common NamePHAVU_001G042100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 235aa    MW: 26473 Da    PI: 8.456
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G042100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY893.9e-2872130158
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                         ++Dgy+WrKYGqK+ k++  pr+Y+rC++a  Cp+kkkv+r+ +d+++++ tY geHnh
  Phvul.001G042100.3  72 VKDGYQWRKYGQKVTKDNASPRAYFRCSMApICPAKKKVQRCLHDKSILVATYDGEHNH 130
                         58***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.7267133IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-2867131IPR003657WRKY domain
SuperFamilySSF1182902.35E-2468131IPR003657WRKY domain
SMARTSM007748.1E-3272132IPR003657WRKY domain
PfamPF031063.4E-2373130IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MLEVLSSKYT VLKSHLQEIN KEQHKGMSSN QRGSVTEPIT DANKRRRLEF PTAKKPLQIF  60
VRTLPTDDSL IVKDGYQWRK YGQKVTKDNA SPRAYFRCSM APICPAKKKV QRCLHDKSIL  120
VATYDGEHNH GALHESSSST PRGSSVAKQL PSMANDKEAM DILALSRWSQ TDSRHIEEVM  180
HQDNYGSNIK VEEYVSSLIK DPEFTMSLAE AVARSITGEI KQQDLDLNLN IPEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-19711301371WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14347KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G042100.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753491e-175EU375349.1 Glycine max transcription factor (WRKY63) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161093.11e-177hypothetical protein PHAVU_001G042100g
TrEMBLV7CSB81e-176V7CSB8_PHAVU; Uncharacterized protein
STRINGXP_007161093.11e-177(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.15e-41WRKY DNA-binding protein 40