PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G059900.1
Common NamePHAVU_001G059900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 357aa    MW: 39938 Da    PI: 9.1377
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G059900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.73.1e-55301571128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+++yL++k+++++++  ++i+ vd++k+ePwdLp k+k ++kewyfF  rd+ky+tg r+nrat++gyWk+tgkdke
  Phvul.001G059900.1  30 LPPGFRFHPTDEELISYYLTNKISDSNFTG-KAIAVVDLNKCEPWDLPGKAKMGQKEWYFFNLRDRKYPTGVRTNRATNTGYWKTTGKDKE 119
                         79*************************999.88***************999999************************************* PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +l++ ++elvg+kktLvfykgrap+gekt+Wvmheyr+
  Phvul.001G059900.1 120 ILNSvTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRI 157
                         **9989999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-6226179IPR003441NAC domain
PROSITE profilePS5100560.30530179IPR003441NAC domain
PfamPF023651.1E-2831157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MQKDKEVVSK EGEDIEMEGT RDEKKKEETL PPGFRFHPTD EELISYYLTN KISDSNFTGK  60
AIAVVDLNKC EPWDLPGKAK MGQKEWYFFN LRDRKYPTGV RTNRATNTGY WKTTGKDKEI  120
LNSVTSELVG MKKTLVFYKG RAPRGEKTNW VMHEYRIHSK STFKIDKQDE WVVCRVFRKS  180
GGARKFPSNS NHTNTRTLNP YSVEVGPSIV PPPMMHLGDP SAHFNFPYGS RNPSELLRGG  240
GSTSANVMNL PTMHPHFNNP AAAGAETAGF TISGLNLNLG GATTQTQPFL RPMMPPPHPL  300
SVAQLNHDFS SNMVTHTALA AHNVGYGADM ANANSHGNRY MAMDHCMDLD NYWPSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-542918516171NO APICAL MERISTEM PROTEIN
1ut4_B1e-542918516171NO APICAL MERISTEM PROTEIN
1ut7_A1e-542918516171NO APICAL MERISTEM PROTEIN
1ut7_B1e-542918516171NO APICAL MERISTEM PROTEIN
4dul_A1e-542918516171NAC domain-containing protein 19
4dul_B1e-542918516171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G059900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-124AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161322.10.0hypothetical protein PHAVU_001G059900g
TrEMBLV7CWM00.0V7CWM0_PHAVU; Uncharacterized protein
STRINGXP_007161322.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-110NAC domain containing protein 38